Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02122 ATGGCTTCTCACTTCTCCCCCCAGTGCCACCTTCTCTCTTTCTCTTCTAACCATTTTCCTATTCCATCACCTTCTCCTTCTATCTTTCATCACCCCTTCACCAAACCCTCTCTGGGTGCTGTATCGTCCGAGAGTAACGACAAACAAGTGATAAGATGCAGAGCTATATACAAGCCACGAACTCAAGAATATTCAGACGTATTTCAGGGTAGTCTAGCAACGTTAAAGTTGCGTGAGATTGATGTGGAGGATGACATAGAAAAGGAGCAAGACATTGGGGTTTTGGTGGGAAATGAGATCAAGAAGCGCGTGGACACTATCAAATCAATATTGGGTTCCATGGATGATGGAGAAATAACCATATCTGCTTATGACACTGCTTGGGTTGCTCTGGTGGAAGATGTTCATGGAAGTGGTGTCCCTCAATTTCCATCGAGTCTAGAATGGATTGCAAAAAATCAACACCCCGATGGATCATGGGGTGATAAAGAAATATTTTCAGCCCATGATCGGATTATTAACACGTTGGCTTGTGTTATTGCATTAAAATCCTGGAATATGCACCATGAAAAGTATGAGAAAGGGATGGCATTTTTTAGAGAGAATCTTAACAAGCTGGAGAATGAGAATGCGGAGCACATGCCAATTGGATTTGAAGTTGCTTTCCCTTCACTTCTTGACTTGGCTCGTGGTTTGAAGATCGAAGTTCCCGAAAATTCCCCTATCCTGAATAAAATCTTTGCAATGAAAGACGTAAAACTCACAAGAATACCAAGAGATATGATGCATAAAGTACCCACGACTCTGCTTCATAGCTTGGAAGGCATGTCAGGACTTGACTGGAATAAACTTCTAAAACTCCAGTCTAATGACGGGTCCTTCTTGTTTTCTCCCTCTTCCACCGCCTTTGCTCTCATGCAAACCAAAGATCAAAATTGTCAAAATTACTTGAATAAAGTGGTCACCAAGTTCAATGGGGGAGTTCCAAACGTGTATCCAGTGGATTTGTTCGAACATATTTGGGTGGTCGATAGGCTGGAACGCCTTGGAATATCTCGGTATTTTCAGCAAGAGATTAAAGACTGTTTGGGTTATGTTTATAGATATTGGACTGAAAAGGGTATTTGTTGGGCAAGAAATTCAGAAGTTCAAGACATTGATGACACAGCAATGGGTTTCAGGTTACTAAGATTATACGGCCACCAAGTTTCAGCAGATGTGTTCAAGTACTTTGAGAGAAATGGTGAATTCTTCTGCTTTAGGGGGCAGAGCACACAAGCTGTGACAGGGATGTTTAATCTGTATAGAGCTACTCAAGTAATGTTCCCCGGAGAGAAAATTCTTGAACATGCCAAGAACTTCTCGGCCAAATTTTTGAGTGATAAGCGTGCAGCAAAAGAGCTAGTAGATAAATGGATCATAATGAAGAACCTGGCAGACGAGGTGGCGTATGCGTTGGACGTGCCATGGTATGCAAACTTGCCTCGCGTGGAGACAAGATTCTACATTGATCAATACGGTGGTGAGAGTGATGTGTGGATAGGCAAAACCCTTTATAGGATGGCCTATGTGAACAACAATAACTATCTCGAGCTTGCTAAATTAGATTACAACAATTGCCAGGCACTACATCTAATTGAGTGGGGGGAAATTCAGAAGTGGTTCTCAGAATCTAGATTGGGAGAGTTTGGAATGAGCAGAAGAAGTCTTCTGTTGGCTTATTTTCTGGCAGCAGCAAACATATTTGAGCCTGAAAGGTCACATGTGAGACTAGCGTGGGCCAAAACCATAGCCTTGCTTGAGACCATAACATCATATGTTAGTGATGCAGAAATGAGGAAAGCTTTTGTCAAAAAATTCAGTGACTGCATTAACAGGCGAGACTACTCCATTGGCTGGAGGTTTAACAGGAAAAGAACAGGACATGGACTCACAGATACCTTGGTTGCCACCATAGATCAAATCTCGTGGGATATACTAGTGTCTCACGGTCATGAAATTGGATATGATATGCATCGTAGTTGGGAAAAGTGGCTTTCAAGTTGGGAATGCGAAGGAGACAAATGTGAAGGACAAGGTGAGCTTTTGGTGCAGATAATAAACCTATGTGCCGGGAATTGGATTTCGGAGGATCAAGTGTTGGATCCACAATATCAGAGTCTCCTTCAACTCACTAACACCGTCTGCTGTACACTCCATTGTCTTCAAAAGGACAAGGAACTCGAGAATGGCGGCAATGGTACGTATGTAAACAGCATCACCACCGAAGAAGTAGAGTCAAAAATGCAAGAACTGGTGCAATTGGTGTACCAAAAATCTCCAACTGGCATTGATTTCAATATCAAGAGTACTTTCCTCACAGTGGCCAAGAGTTTTTACTATACAGCATTCTGTGATGCAAGGACCACCAACTTCCATGTTGCCAAAGTTCTGTTTGATAAAGTTGTTTAA 2451 0.4223 MASHFSPQCHLLSFSSNHFPIPSPSPSIFHHPFTKPSLGAVSSESNDKQVIRCRAIYKPRTQEYSDVFQGSLATLKLREIDVEDDIEKEQDIGVLVGNEIKKRVDTIKSILGSMDDGEITISAYDTAWVALVEDVHGSGVPQFPSSLEWIAKNQHPDGSWGDKEIFSAHDRIINTLACVIALKSWNMHHEKYEKGMAFFRENLNKLENENAEHMPIGFEVAFPSLLDLARGLKIEVPENSPILNKIFAMKDVKLTRIPRDMMHKVPTTLLHSLEGMSGLDWNKLLKLQSNDGSFLFSPSSTAFALMQTKDQNCQNYLNKVVTKFNGGVPNVYPVDLFEHIWVVDRLERLGISRYFQQEIKDCLGYVYRYWTEKGICWARNSEVQDIDDTAMGFRLLRLYGHQVSADVFKYFERNGEFFCFRGQSTQAVTGMFNLYRATQVMFPGEKILEHAKNFSAKFLSDKRAAKELVDKWIIMKNLADEVAYALDVPWYANLPRVETRFYIDQYGGESDVWIGKTLYRMAYVNNNNYLELAKLDYNNCQALHLIEWGEIQKWFSESRLGEFGMSRRSLLLAYFLAAANIFEPERSHVRLAWAKTIALLETITSYVSDAEMRKAFVKKFSDCINRRDYSIGWRFNRKRTGHGLTDTLVATIDQISWDILVSHGHEIGYDMHRSWEKWLSSWECEGDKCEGQGELLVQIINLCAGNWISEDQVLDPQYQSLLQLTNTVCCTLHCLQKDKELENGGNGTYVNSITTEEVESKMQELVQLVYQKSPTGIDFNIKSTFLTVAKSFYYTAFCDARTTNFHVAKVLFDKVV 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02122 816 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 84 812 - -
Cca03g02122 816 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 84 812 - -
Cca03g02122 816 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 119 202 IPR008930 -
Cca03g02122 816 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 291 511 IPR008930 -
Cca03g02122 816 Gene3D - 106 538 IPR036965 GO:0010333|GO:0016829
Cca03g02122 816 Gene3D Farnesyl Diphosphate Synthase 540 816 IPR008949 -
Cca03g02122 816 SUPERFAMILY Terpenoid synthases 525 799 IPR008949 -
Cca03g02122 816 SFLD Terpene Cyclase Like 1 N-term - Enzymatic 98 520 - -
Cca03g02122 816 Pfam Terpene synthase, N-terminal domain 280 486 IPR001906 GO:0010333|GO:0016829
Cca03g02122 816 Pfam Terpene synthase family, metal binding domain 530 685 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca03g02122 816 Coils Coil 189 209 - -
Cca03g02122 816 Gene3D - 123 335 - -
Cca03g02122 816 SFLD Terpene Cyclase Like 1 N-term 98 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02122 Cca-Chr3 41673866 41682884 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02122 K04120 - gmx:100784193 1425.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02122 03 41673866 41682884 Cca03g02122 03 41673866 41682884 ECH