Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02116 ATGGCTTCCAGGTTGTCCTTCACTCTCAGTCATAGGCCTCTTTCTTCATGTGCACCAAAATCTCGTGTTCCTGTCTTTTTCTCCTTTCAACCATCTTATAATATTTCAAGGGGTATTCGTCCTCTTCGATTCACAGAAATCAAGCATCTCAAGGTTTGTGGATTTCAGCCAATACGCTCTCGGGCTCAAGAATGTGTTGATGAAGTGTCTAAGGATAATTTGGAAGAGGAAGCTCTTCAGAATGTTTTGGTAACAAACGAGATTCAAAAGAAGATAAATGAAATAAAATTGATGTTGGATTCGATGGAAGATGGAGAAATCACGATATCAGCTTATGACACAGCATGGGTTGCTCTAGTGAAAAATGTTGATGATGGAAATTCACCTCAATTCCCATCGTGTCTTGAATGGATTGCGAATAATCAGCTACACGATGGCTCATGGGGAGACGGTGAATCATTCGAAGCACATGATCGCATTCTCAACACGTTAGCTTGTGTTATAGCACTAAGATCGTGGAACATGCATCCTGAGAAGTGTGAGAAGGGAATGACATTCTTTAAGAAAAATTTGTACAAGCTTAAGGACGTGAATGCAGAGCATATGCCTATTGGGTTTGAAGTTGCTTTCCCTTCTCTTCTCGATTTGGCTCGAAGTTTGAATATTGAAGTGCCAGATGACTCTTCTATCTTGAAAGATATTTTAGCAATGAGAGACCTGAAGCTTAAAAAAATACCGAAAGAAGTTCTGCACAAGGTGCCAACAACGCTGCTTCATAGTTTGGAGGGAATGCCAAATTTAGACTGGAATCAGCTTCTAAAGTTGCAGTCACAAGACGGATCATTCTTATTCTCTCCATCCTCCACAGCCTATGCTCTAATGAACACTAAAGATGAAAAAGCTCTCAAATATCTGAACAAAACAGTGAAGAGGTTCAATGGGGGAGTTCCAAATGTCTACCCGGTGGATTTGTTTGAACACATATGGGTTCCTGATCGACTCGATCGGCTTGGAATTTCAAGATATTTTCAGTCAGAGATTAAAGATTGTGCGAATTATGTTTCAAGGTATTGGAATGAGAAGGGTATTTGCTGGGCAAGGAATTCAGAGGTTCAAGATATAGATGACACAGCAATGGGATTTAGACTCCTAAGGTTGAATGGGCACCAAGTTTCACCCAATGTGTTTGAGAACTTTAAGAAAAATGGCAAGTTCTTCTGCTTTTCTGGGCAGTCAAACCAAGCAGTTACTGGAATGTTTAACCTTTATAGAGCATCTCAAGTGCTATTTCAAGGAGAGAAGATTCTAGAGGATGCCAAGAACTTTTCTTCCAAATTTTTAACTCAGAAACGTGCTGCAAATGAGCTCCTAGATAAATGGATCATAACCAAAGATTTACCAGCCGAGGTGGGTTACGCGCTGGACGTGCCCTGGTATGCCAGCTTACCTAGACTGGAGACAAGATTTTACTTTGAACAATATGGTGGTAGCAGTGATGTTTGGATTGGCAAGACCCTTTACAGGATGCCGTACGTGAACAATGATGTTTATGTAGAGCTGGCAAAACTGGATTACAGCAACTGTCAAAAAGTGCATCTTGCAGAATGGGAAAAGATCCAAAGGTGGTACTCGGAAGCAGAACTAGAGGGGTTTGGATTGAGCAAACAAAGTCTCCTATTTGCTTATTTCATAGCAGCAGCCAACATATTTGAGCCTGAAAGGTCTCGAGAGAGACTTGCATGGGCTGTAACAGCAGCATTGGTCGAGACACTGAGGTCCTACATAAAGGATGGAGAAACTAGTAGTGCTTTTGTAGATTCGTTCAACAGCAACATTAATGGACGAAACAACTCAAACAACAAGCAATTGAACAAGAGAGAGGAGAAACTTCTGGAGATCTTGCTGAAAAATCTTGATTACCTTGAGCTCGAAATGTTTCCGAGTCGTTCTCAGGAATTCTCCCATTATTTGTATAAAGTGTGGCAAAGCTGGCTTTCAAGTTGGCAAAATGAAGGGAACAGCTTCGGAAGAGAAGCTGAGCTGATTGTGAAAATCACAAATGGAATTGCTGGTCATTGGTCAGAAGAACTAGAGCTCAATCCACAGTACCAGAGGTTGATGGAAGTCACTAACAGAGTCTGCCAAGGGCTTCGCAATTATCAAAGCAGCAAGGCACATGATAGTGGCAAAGACAACTTGAGTACAACCAGCGTTACTACCCCTCAAATAGAATCAGACATGCAAGAACTTGTGGAATTGGTGCTCCAAAATTCCTCAGATTGCGTGCACTCCAGTGTCAAGAATTCATTCTTCATGGTGGCGAAGGGCTTTTATTATTCAGCATATTTTGATCCAGAGACCATAAACTCTCATATTGAGAAGGTTCTCTTTCAAAAAGTGATGTAA 2406 0.4123 MASRLSFTLSHRPLSSCAPKSRVPVFFSFQPSYNISRGIRPLRFTEIKHLKVCGFQPIRSRAQECVDEVSKDNLEEEALQNVLVTNEIQKKINEIKLMLDSMEDGEITISAYDTAWVALVKNVDDGNSPQFPSCLEWIANNQLHDGSWGDGESFEAHDRILNTLACVIALRSWNMHPEKCEKGMTFFKKNLYKLKDVNAEHMPIGFEVAFPSLLDLARSLNIEVPDDSSILKDILAMRDLKLKKIPKEVLHKVPTTLLHSLEGMPNLDWNQLLKLQSQDGSFLFSPSSTAYALMNTKDEKALKYLNKTVKRFNGGVPNVYPVDLFEHIWVPDRLDRLGISRYFQSEIKDCANYVSRYWNEKGICWARNSEVQDIDDTAMGFRLLRLNGHQVSPNVFENFKKNGKFFCFSGQSNQAVTGMFNLYRASQVLFQGEKILEDAKNFSSKFLTQKRAANELLDKWIITKDLPAEVGYALDVPWYASLPRLETRFYFEQYGGSSDVWIGKTLYRMPYVNNDVYVELAKLDYSNCQKVHLAEWEKIQRWYSEAELEGFGLSKQSLLFAYFIAAANIFEPERSRERLAWAVTAALVETLRSYIKDGETSSAFVDSFNSNINGRNNSNNKQLNKREEKLLEILLKNLDYLELEMFPSRSQEFSHYLYKVWQSWLSSWQNEGNSFGREAELIVKITNGIAGHWSEELELNPQYQRLMEVTNRVCQGLRNYQSSKAHDSGKDNLSTTSVTTPQIESDMQELVELVLQNSSDCVHSSVKNSFFMVAKGFYYSAYFDPETINSHIEKVLFQKVM 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02116 801 Coils Coil 624 644 - -
Cca03g02116 801 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 279 498 IPR008930 -
Cca03g02116 801 SUPERFAMILY Terpenoid synthases 513 763 IPR008949 -
Cca03g02116 801 SFLD Terpene Cyclase Like 1 N-term - Enzymatic 83 508 - -
Cca03g02116 801 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 103 388 IPR008930 -
Cca03g02116 801 Gene3D Farnesyl Diphosphate Synthase 528 801 IPR008949 -
Cca03g02116 801 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 77 798 - -
Cca03g02116 801 Pfam Terpene synthase family, metal binding domain 519 671 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca03g02116 801 SFLD Terpene Cyclase Like 1 N-term 83 508 - -
Cca03g02116 801 Gene3D - 111 323 - -
Cca03g02116 801 Gene3D - 94 525 IPR036965 GO:0010333|GO:0016829
Cca03g02116 801 Pfam Terpene synthase, N-terminal domain 268 474 IPR001906 GO:0010333|GO:0016829
Cca03g02116 801 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 77 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02116 Cca-Chr3 41542127 41549372 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02116 K04120 - gmx:100807519 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02116 03 41542127 41549372 Cca03g02116 03 41542127 41549372 ECH