Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02111 ATGAGTGTTCAATTATCAAGCTTATGGGTCCCCAATTCTCCACCAATACCCACACACTTCATTCCCAACCGTTGCAGATTCACCCCATCAGCTATCTCACCCCAATCCCCCACCATTCAGATAATTGGTGTGAGAGGCCCTAGTTGGAGGGATAACGGATATGAGTGCCAAGGAGAGAGTGATCATTGGAGTGACCTTGACTCTGATCTTTATCACTGGACAAAGCCATTACGCCCTGTGCAGTGGTTTCCTGGTCATATAGCAAAAGCTGAAAAAGAACTGAAGGAGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCTATGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATTTTGGTTTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTGCTAGGAATGGCACAAAGGTTGTCTTTTCCAATGGGCAGCTTGGAATGGGCACGATGAAGCTAGGACGGTTAGCTAAGGAATTAGCAGCAGATGTAAATGTTAAGCGTAGAGCCAAAGGATTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGGAAATCATCTTTGATTAACCGTTTATTAAAGCGAAGAATGTGCCCAGCAGCTCCCAGACCAGGAGTCACAAGAGAATTGAAGTGGGTTCGTTTCGGGAAAGATCTTGAACTGCTGGATTCTCCTGGGATACTCCCGATGCGAATCAGTGATCAGTCAGCTGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCCTATGATGTGACCGATGTTGCTGCAGTTCTTGTGCAGATGCTCACAAAACTTCCCATAGTAGGGAGAGATGCTCTTTGTAAACGATACAAGATTGATGTAGATAATCAATGTGGTAAAATATTCATAGAGAAGCTTTCTGTTCAACTATTTAATGGAGATGTTCATCAAGCAGCATTCCGTGTCCTAGCAGATTTTAGAAAAGGTAAGTTTGGTTGGACTGCACTGGAGAGGCCTCCTAGGTGA 1071 0.4426 MSVQLSSLWVPNSPPIPTHFIPNRCRFTPSAISPQSPTIQIIGVRGPSWRDNGYECQGESDHWSDLDSDLYHWTKPLRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMISTADRNAWADYFARNGTKVVFSNGQLGMGTMKLGRLAKELAADVNVKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVTDVAAVLVQMLTKLPIVGRDALCKRYKIDVDNQCGKIFIEKLSVQLFNGDVHQAAFRVLADFRKGKFGWTALERPPR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02111 356 Gene3D - 258 346 IPR023179 -
Cca03g02111 356 PRINTS GTP1/OBG GTP-binding protein family signature 200 220 IPR006073 GO:0005525
Cca03g02111 356 PRINTS GTP1/OBG GTP-binding protein family signature 246 261 IPR006073 GO:0005525
Cca03g02111 356 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 55 356 - -
Cca03g02111 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 320 IPR027417 -
Cca03g02111 356 PANTHER DAR GTPASE 3, CHLOROPLASTIC 55 356 - -
Cca03g02111 356 TIGRFAM GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 80 352 IPR019991 -
Cca03g02111 356 CDD YlqF 82 253 - -
Cca03g02111 356 Pfam 50S ribosome-binding GTPase 200 270 IPR006073 GO:0005525
Cca03g02111 356 Gene3D - 80 253 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02111 Cca-Chr3 41442990 41447801 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02111 K19828 - gmx:100784201 660.988