Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02104 ATGGAAGCAACGCGATTCTCCACTAATCACTTCCATCCACACTGCTTCCAAACGAGACCCAACGCATTCAGAGGAAGAAGATACGCAAAATGCACCAACGGAAATGGAGCTAGGGTTTCGCTTTTCGCAATCCCCGCATTCAAGGCACCCAAGCCGAACCGGACTCTCTCGGTTAACTTCTCCGACCGCCTCCGAAGCGACTATGTACGCGTCGAGGCTCCGAAGAACGAGGATGTTCTTCCGGCGAGTCGCGGCGGCGGAGGGGAAGCGGTGGCCGCGTCCTCGCCCGGCGCTGACGGCTCTGGAACACTGGAATTGAAACCTAGAATGTTCAGAAACAGGTTTCTGAACTTTGTGCGTTTGGGGTCGGTGATTAATGGTGCCGCTGAGTCGTTTTTCAAGAGCGAGATTCGGAGGAGGCTGTTCGTGACGGGTGTGCTGATTGTGATTAGTCGCGTTGGTTATTTTATTCCTCTTCCTGGGTTTGACAGAAGGTTGATACCGCAAGACTACTTGAGCTTTGTTTCAGGGTCTTCTGTTGATGAACTTGGTGACTTCACCGCTGAGCTCAAGCTATCTCTTTTCCAGCTGGGAATCAGTCCTCAGATAATAGCGTCCATTATTATGCAGGTACTCTGTCATGTTGTCCCTTCACTAGTAAAGCTACGGAAAGAAGGTCTGGATGGGTACGAGAAGATTAAGAGTTATATATGGTGGATGTCATTTGGCTTTGCAATTGTGGAAGCTTTAATAGTTTCTTGTTACTCACTTCCATATTCAATTTATGCTGCCAGTTATAGGGTCAAGCATGTAATGATGACAACTGTTTTGTTGGTTTGTGGTGCAATGACTATTACATGGATATGTGATACAATATCAGAATCTGGATTTGGTCAAGGTTCATCTCTTATCATATGCGTAGGAATACTTACGGGATATATGGAGACACTATACAAAATGCTTACTCAGCTTTCAGTGAGTGCTGTGAGTTGGTGGCCGTATGTGCTTGCAGTATTGGGTATCTTCACCACCGTCACTATGTGGGCAGTTGTAGTAACTGAAGGTTGTAGGAAAGTAAAGCTTCAATACTATGGTTTTAAACTTGCTTCTGCTGCAAGGGAGCAATCACCTGTTACTGAAGTGGAGCCCTATATTCCTTTCAATATTAATCCAGCGGGGATGCAACCTGTTCTTACCACCTCTTACCTCTTGGCATTTCCAAGCATTCTTGCAAGTCTGCTGAGGTCACCTTTTTGGGAGCATGTCAAGGAAATGTTGAACCCTGAAACTTCTGTTGGTGCTGAGCCATGGGTTTACTATTCCATATATGCCTTTTTTGTCTTCCTGTTCAATATATTTGATATTGCTAACATGCCAAAGGAAATTGCTGATTATTTAAATAAGATGGGGGCAAGAATACCAAACATAAAGCCTGGGAAAGCTACCATTGAGTACCTATCTAAGGTTCAGGCATCCACACGATTTTGGGGGGGCCTATTGTTAAGTGTTTTGGCAACTACATCAAGTGTTCTTGACCACTATTTACGGCGTATAAATGCTGGATTTGCTATTGGTTTTACATCTGTTCTAATTATTGTCGGTTCCATTATTGAACTTAGAAGATCGTATCAAGCATATAATGTAATGCCAAGCTTAAGCAATGCTTTGAGACGATATGGGCATTTGCATTTGATTTCCAGGAAGCTTGGTTTTTCGGGGACATTACAGACTTACAGTCTAGTTTGCGCGTATAAGAATATCGATGTTAGCTAG 1773 0.4416 MEATRFSTNHFHPHCFQTRPNAFRGRRYAKCTNGNGARVSLFAIPAFKAPKPNRTLSVNFSDRLRSDYVRVEAPKNEDVLPASRGGGGEAVAASSPGADGSGTLELKPRMFRNRFLNFVRLGSVINGAAESFFKSEIRRRLFVTGVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSSVDELGDFTAELKLSLFQLGISPQIIASIIMQVLCHVVPSLVKLRKEGLDGYEKIKSYIWWMSFGFAIVEALIVSCYSLPYSIYAASYRVKHVMMTTVLLVCGAMTITWICDTISESGFGQGSSLIICVGILTGYMETLYKMLTQLSVSAVSWWPYVLAVLGIFTTVTMWAVVVTEGCRKVKLQYYGFKLASAAREQSPVTEVEPYIPFNINPAGMQPVLTTSYLLAFPSILASLLRSPFWEHVKEMLNPETSVGAEPWVYYSIYAFFVFLFNIFDIANMPKEIADYLNKMGARIPNIKPGKATIEYLSKVQASTRFWGGLLLSVLATTSSVLDHYLRRINAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGHLHLISRKLGFSGTLQTYSLVCAYKNIDVS 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02104 590 Pfam SecY 193 539 IPR002208 GO:0015031|GO:0016020
Cca03g02104 590 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 115 560 IPR002208 GO:0015031|GO:0016020
Cca03g02104 590 SUPERFAMILY Preprotein translocase SecY subunit 123 546 IPR023201 -
Cca03g02104 590 MobiDBLite consensus disorder prediction 79 100 - -
Cca03g02104 590 Gene3D SecY subunit domain 125 551 IPR023201 -
Cca03g02104 590 PRINTS Preprotein translocase SecY subunit signature 192 212 - -
Cca03g02104 590 PRINTS Preprotein translocase SecY subunit signature 525 543 - -
Cca03g02104 590 PRINTS Preprotein translocase SecY subunit signature 141 159 - -
Cca03g02104 590 PRINTS Preprotein translocase SecY subunit signature 268 293 - -
Cca03g02104 590 PRINTS Preprotein translocase SecY subunit signature 392 411 - -
Cca03g02104 590 PRINTS Preprotein translocase SecY subunit signature 437 459 - -
Cca03g02104 590 PRINTS Preprotein translocase SecY subunit signature 233 256 - -
Cca03g02104 590 PRINTS Preprotein translocase SecY subunit signature 294 317 - -
Cca03g02104 590 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTIC 115 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02104 Cca-Chr3 41342911 41350620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02104 12 560 Miscellaneous Gene Families AT2G31530 71.071 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02104 - - gmx:100803256 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02104 03 41342911 41350620 Cca03g02104 03 41342911 41350620 ECH