Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02100 ATGAATATGATTGCAACCAACAGGGACAAAAGCTCTTTAATCGAAGACAAGAAGAAGATGGGGTTTGGAACAAAATGTGTAGCAATTGCGATTGGTTTGTTGTGGCAGTGGGGTGTTGCTGAATGCATTCCCAACACTAACATCATCAACGTTCTGTGCAACAGTGGGGTGTACACCTCAGGGGACCCGTTTGGTATTAGCCTAAGCTATGTGTTGGGGGACTTAGAGAAGGAAACACCAACACAGAAGAATTACGAGTACCACAACATTTCACCTTATCCTAATGCCTATGCCTATGGACATGCTTCTTGCAACCTTAACATCACTTCCTCTGACTGCAAAACATGTCTTGGCGCTGCTAAAACAGCCTTGTTTAGCACGTGTCAGACACCACGGATCGGGGCTCGTTCGGTGCTCCATCATTGTACAATCAGGTACGAGCAATACCCCTTTGACGATTAG 462 0.4567 MNMIATNRDKSSLIEDKKKMGFGTKCVAIAIGLLWQWGVAECIPNTNIINVLCNSGVYTSGDPFGISLSYVLGDLEKETPTQKNYEYHNISPYPNAYAYGHASCNLNITSSDCKTCLGAAKTALFSTCQTPRIGARSVLHHCTIRYEQYPFDD 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02100 153 Pfam Salt stress response/antifungal 53 149 IPR002902 -
Cca03g02100 153 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 27 152 - -
Cca03g02100 153 Gene3D - 44 151 IPR038408 -
Cca03g02100 153 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 27 152 - -
Cca03g02100 153 ProSiteProfiles Gnk2-homologous domain profile. 46 151 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02100 Cca-Chr3 41292671 41293292 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02100 - - gmx:102664018 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02100 03 41292671 41293292 Cca03g02100 03 41292671 41293292 ECH