Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02097 ATGAAGCTCGTCAGGTTTCTCATGAAGTTGAACAACGAAACTGTATCGATCGAGCTTAAGAACGGTACAGTTGTTCACGGCACCATTACAGGTGTTGACATCAGTATGAATACACATTTGAAAACAGTTAAACTAACTCTGAAAGGGAAAAATGCAGTTACTTTGGATCATCTCAGCGTGAGAGGCAACAACATTCGTTGTTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGACTCCTAGGATCAAGCCTAAGAAGCCAACTGCTGGGAAGCCTTTGggacgaggacgggggagaggacgtggacgcgggcgtggtcgtggtggtggccgATAA 351 0.3504 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNAVTLDHLSVRGNNIRCYILPDSLNLETLLVEETPRIKPKKPTAGKPLGRGRGRGRGRGRGRGGGR 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02097 116 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 111 IPR027141 GO:0006396
Cca03g02097 116 MobiDBLite consensus disorder prediction 93 116 - -
Cca03g02097 116 Gene3D - 1 50 - -
Cca03g02097 116 Gene3D - 51 82 - -
Cca03g02097 116 SMART Sm3 5 70 IPR001163 -
Cca03g02097 116 SUPERFAMILY Sm-like ribonucleoproteins 4 115 IPR010920 -
Cca03g02097 116 Pfam LSM domain 5 68 IPR001163 -
Cca03g02097 116 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 1 111 - -
Cca03g02097 116 MobiDBLite consensus disorder prediction 83 116 - -
Cca03g02097 116 CDD Sm_D1 2 93 IPR034102 GO:0000387
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02097 Cca-Chr3 41265552 41269357 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02097 K11087 - csin:114287684 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02097 03 41265552 41269357 Cca03g02097 03 41265552 41269357 ECH