Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02093 ATGTTGCATGCCCCGAACCTTGCCATGAGGGAGTTCCAACCAGGGAGCTTCGTGTACGATGCAGAGGATATTCCATTTGGGACACTCTGGTGGTTCTTCTATGCTGGAATTTCATGCCTCCTTGTTTTCTTTGCTGGGATTATGTCTGGTCTCACACTTGGTTTAATGTCTCTGGGTCTCGTTGACCTTGAGATTCTCCAGCGGAGTGGCTCCTCCACTGAGAAGAAACAAGCTGCTGCTATTCTACCCGTTGTTCAGAAACAGCATCAGTTGCTTGTCACCTTGCTTCTTTGTAACGCTTGTGCCATGGAGGCACTTCCAATTTACCTTGACAAGATTTTTCATCCTTTTGTAGCAGTAGTGTTATCTGTGACTTTCGTTCTAGCTTTCGGAGAGGTTATCCCACAAGCTATATGCACAAGATATGGACTTTATGTTGGTGCTAATTTTGTGGGGCTTGTACGGGTCCTGATGATTATCTGTTACCCAATTGCTTACCCTATTGGAAAGGTTCTGGATGTTTTACTTGGACACAGTCATGCACTGTTTAGGCGAGCACAGCTGAAAGCCCTTGTTTCAATCCATAGCCAAGAGGCTGGAAAAGGAGGTGAACTCACTCATGATGAGGCAACAATTATCAGTGGAGCACTAGATCTCACAGAGAAGACGGCACAGGAGGCTATGACACCAATTGAATCAACATTTTCCTTGGATGTTGCTTCCAAATTGGACTGGGAAGCAATTGGGAAAATCCTTGCACGAGGTCATAGTCGTGTCCCTGTATACAGCGGAAACCCCAAAAATATAATTGGCCTCTTACTAGTAAAAAACCTTCTTACTGTAAGAGCTGAAACAGAGACTCCAGTTAGTGCTGTTTCAATCCGGAGAATTCCTAGGGTTCCAGCAGATATGCCTTTATACGATATCCTCAATGAGTTTCAAAAAGGAAGCAGCCATATGGCAGCAGTAGTCAGGGTTATAGGAGAGAAAAACAACCCTCCAAAACCTGGTTACAGTGAGAAATCAAAGGATAAAGAAGTCATCAAACATACTTCTCAACTAACTATGCCATTACTAGCCAGGTTTTGTGAGAAATCAGAAAATACTGTTATCAATATTGACAAACAATTTCAAAAAGATGGCACTTCAACAAATGGTATCCACCACTCTCTTGACAACGCCGAAGACGGTGAGGAAGTTATTGGCATCATTACCCTGGAGGACGTGTTTGAAGAACTCCTGCAGGAAGAAATTGTGGATGAGACTGATGTGTATATAGATGTACATAGAAGAATACGCGGGGCTGCTGTGGCAGCAGCTACATCTGTGGCAGCAGCTACATCTGTGGCACGAGTTCCATCTGGGCGAAAGTTGACAGGTCACAAGCCTGTAGTAAGTCAGAATCAGGTTTCAAGATTTTTTTCTATCTAA 1431 0.4382 MLHAPNLAMREFQPGSFVYDAEDIPFGTLWWFFYAGISCLLVFFAGIMSGLTLGLMSLGLVDLEILQRSGSSTEKKQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVVLSVTFVLAFGEVIPQAICTRYGLYVGANFVGLVRVLMIICYPIAYPIGKVLDVLLGHSHALFRRAQLKALVSIHSQEAGKGGELTHDEATIISGALDLTEKTAQEAMTPIESTFSLDVASKLDWEAIGKILARGHSRVPVYSGNPKNIIGLLLVKNLLTVRAETETPVSAVSIRRIPRVPADMPLYDILNEFQKGSSHMAAVVRVIGEKNNPPKPGYSEKSKDKEVIKHTSQLTMPLLARFCEKSENTVINIDKQFQKDGTSTNGIHHSLDNAEDGEEVIGIITLEDVFEELLQEEIVDETDVYIDVHRRIRGAAVAAATSVAAATSVARVPSGRKLTGHKPVVSQNQVSRFFSI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02093 476 Gene3D - 207 338 IPR046342 -
Cca03g02093 476 Gene3D - 339 421 IPR046342 -
Cca03g02093 476 SUPERFAMILY CBS-domain pair 214 415 IPR046342 -
Cca03g02093 476 Pfam Cyclin M transmembrane N-terminal domain 37 208 IPR002550 -
Cca03g02093 476 CDD CBS_pair_CorC_HlyC_assoc 223 329 IPR044751 -
Cca03g02093 476 ProSiteProfiles CNNM transmembrane domain profile. 27 209 IPR002550 -
Cca03g02093 476 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 13 466 IPR045095 GO:0010960
Cca03g02093 476 PANTHER BNAC05G01850D PROTEIN 13 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02093 Cca-Chr3 41221458 41226500 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02093 K16302 - gmx:100777230 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02093 03 41221458 41226500 Cca03g02093 03 41221458 41226500 ECH