Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02089 ATGGCAAGTACCTTGCCATGTTTCTCATTCTCAGTGATTCCTAGGAATCCGCAAAAACCCAAATGCTCTTGTTTTCACAAACCCTTTGGCCAAAGGAAGCATCACCAACTTGAATCGCAAAACCTCGTTAACTCCTTTTCGCACAATTCCACTTCAAAATTGTGTGCCATGTCACGGTTGTCCATTGAGGAAACTCAGCAGCAAATTGGCACCTTGACCCGACCCGAAGACCTAAAAGGGGCAGTGGCGTACTTGTTTAGGACAGAAACTGGTGGTGGTTTGGTGAAGGTTTATGTCACAAAGAAAAAAGATAGGTATTCCGTTTACATTGAGATTTCTTCGTTGGATATGAGTGGTTGCGGTGAGGGTGAAACGCTGGTGTTGTGTTGGGGTGTGTATAGAGCTGATTCATCGTGTTTTGTGGATCTGGATTCCACAGGTTTGAGTGTAAATGCGGCAAAAGGGATGAATGTTAGTCCCTTGGTGCAAAATTCTGGTGGCAATTTTGAAGTTGAATTGGAATTTGATGCTAAACATGTTCCCTTGTACTTGTCATTTTTCTTGATGTCATCTTTGCATGCAGGGCTGGAAATCAGAAGCCACAGGAGAACAAATTTTTGTGTGCCGGTTGGGTCTCTACCGGGGTACCCGGGTCCTTTGGGGCTCTCTTATAATGCTGATGGGACTGTGAATTTTGCCATTTTCTCAAGACATGCAGAGAGTGTGGTTTTGTGCTTGTATGATGACAATGGTGTGGAGAAACCTGCTTTGGAGCTTGATCTGGATCCTTATGTGAACAGGTCAGGTGACATCTGGCATGTCTCATTAGAGAGTGCCAAGAGTTTTGTGAGCTATGGTTATCGCTGCAGAGGGGGTGGTCTTAAGCAGAACAAGGATGATAGTGGTGCTGATCATGTTGTTTTGGATCCGTATGCTAAGATTGTGAATTCTTATCCTAATGGTCTTGGATCAGTGAAGAATCTTGGATGGTTGGGGAAGGAACCTGCTTTTGACTGGGGTGGTGATTTTCATCCAGGTTTGTCCTTGGAGCAACTACTGGTCTATAGGTTGAATGTGAAGCGCTTTACGCAACATGAGTCCAGCCAACTTCCAAGTGGTTTAGCTGGGACCTTTACTGGTTTGGCTAAGAAGGTGCAGCATTTTAAAGATCTTGGTGTGAATGCTGTTCTGCTGGAGCCGGTTTTCATGTTTGATGAGAAAAAAGGACCATATTTTCCTTGCCATTTTTTCTCTCTGATGCTTAGTTATGGACCATCTGGTGGTCCTTTATCTACGTTTGCCTCTATGAAAGAGATGGTTAAAACTATGCATGCCAAAGGGATAGAAGTTCTTTTGGAAGTTGTTTTCTCCAATACTGCTGAAGTTGGCGCTCTACGGGGACTTGATGACTTGTCCTACTATTATGCAAGTGGAGTTGATGATTTGAAGATACAGAGTGCTTTGAACTGTAACTATCCTATAGTGCAAAATTTGATTCTAGATAGTCTTCGGCATTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCATAAATGCTTCACACTTGCTGAGGGGATTTCATGGGGAGTACTTGTCTCGACCTCCATTAGTTGAAGCAATTGCTTTTGACCCAGTACTCTCCAAGACTAAAATCATTGCCGATTGCTGGGATCCCCATGACATGGTAACAAAGGAAACTCGCTTTCCTCATTGGATGAGATGGGCTGAACTAAATGCAAATTTTTCTAATGACGTGAGGAACTTTATAAGGGGTGAAAATATTCTTAGTGACCTTGCAACAAGACTGTGTGGGAGCTGGGACATGTTTTCTGGTGGACGAGGCCCAGCATTCTCTTTTAATTATATTTCAAGGAACTTTGGATTTTCTCTTCTGGACTTGGTTAGCTTCAGCAGTGCAGCAGAATTAAGTTGGAATTGTGGAGAAGAAGGACCTACTAATAACACCGCTGTCCTCGAAAGACGACTCAAACAAATTCGAAATTTCCTCTTCATCTTGTTTGTGTCATTAGGGGTACCTGTTCTGACTATGGGAGATGAATGTGGCCAGTCTTCTGGTGGTTCCTCTGCACATGATGACATGAAACCTTTCAACTGGAGTGCTTTGAAAGCAGGTTTTGGTAAACAAACCACTCAATTCATATTCTTTTTAAGTTCATTGAGAAGGAGGAGGAGTGATCTTCTTCAGAGTAGGAGCTTCTTTAAAGAAGAAAACATTGAATGGCATGGAAGTGATGGGGCTCCACCAAGATGGGAAGACCCTTCCTGCAGGTTCCTAGCCATGACTTTGAAGCCTGAAGTAACAGAGTTGATAGAGAGCTCTGTATCTTCTGATATATCTGGGGATCTATTTATTGCTTTCAATGCAGCTGATCATCCAGAAACTGCAGTTTTACCCTTACCTCCAAAAGGGATGTCATGGTACCGTTTAGTTGATACAGCTCTGCCATTTCCTGGGTTTTTCTCAACCAACGGTGAAGTTGTCCCTGAGCAGACAGCAGATTTGTTTACTTATCAAATGAAGTCTTTCAGCTGCACTTTGTTTGAGGCAAATAATCGTACCATTTAA 2589 0.4299 MASTLPCFSFSVIPRNPQKPKCSCFHKPFGQRKHHQLESQNLVNSFSHNSTSKLCAMSRLSIEETQQQIGTLTRPEDLKGAVAYLFRTETGGGLVKVYVTKKKDRYSVYIEISSLDMSGCGEGETLVLCWGVYRADSSCFVDLDSTGLSVNAAKGMNVSPLVQNSGGNFEVELEFDAKHVPLYLSFFLMSSLHAGLEIRSHRRTNFCVPVGSLPGYPGPLGLSYNADGTVNFAIFSRHAESVVLCLYDDNGVEKPALELDLDPYVNRSGDIWHVSLESAKSFVSYGYRCRGGGLKQNKDDSGADHVVLDPYAKIVNSYPNGLGSVKNLGWLGKEPAFDWGGDFHPGLSLEQLLVYRLNVKRFTQHESSQLPSGLAGTFTGLAKKVQHFKDLGVNAVLLEPVFMFDEKKGPYFPCHFFSLMLSYGPSGGPLSTFASMKEMVKTMHAKGIEVLLEVVFSNTAEVGALRGLDDLSYYYASGVDDLKIQSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFINASHLLRGFHGEYLSRPPLVEAIAFDPVLSKTKIIADCWDPHDMVTKETRFPHWMRWAELNANFSNDVRNFIRGENILSDLATRLCGSWDMFSGGRGPAFSFNYISRNFGFSLLDLVSFSSAAELSWNCGEEGPTNNTAVLERRLKQIRNFLFILFVSLGVPVLTMGDECGQSSGGSSAHDDMKPFNWSALKAGFGKQTTQFIFFLSSLRRRRSDLLQSRSFFKEENIEWHGSDGAPPRWEDPSCRFLAMTLKPEVTELIESSVSSDISGDLFIAFNAADHPETAVLPLPPKGMSWYRLVDTALPFPGFFSTNGEVVPEQTADLFTYQMKSFSCTLFEANNRTI 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02089 862 SMART aamy 356 731 IPR006047 GO:0005975
Cca03g02089 862 CDD AmyAc_plant_IsoA 348 736 IPR044096 GO:0019156|GO:0019252
Cca03g02089 862 SUPERFAMILY Glycosyl hydrolase domain 743 857 - -
Cca03g02089 862 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 219 312 IPR004193 GO:0004553|GO:0005975
Cca03g02089 862 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 59 860 - -
Cca03g02089 862 SUPERFAMILY E set domains 214 345 IPR014756 -
Cca03g02089 862 Gene3D Glycosidases 333 743 - -
Cca03g02089 862 SUPERFAMILY (Trans)glycosidases 335 734 IPR017853 -
Cca03g02089 862 Pfam Alpha amylase, catalytic domain 376 462 IPR006047 GO:0005975
Cca03g02089 862 Gene3D Immunoglobulins 207 326 IPR013783 -
Cca03g02089 862 PANTHER GLYCOGEN DEBRANCHING ENZYME 59 860 - -
Cca03g02089 862 Gene3D - 744 861 IPR013780 -
Cca03g02089 862 CDD E_set_GDE_Isoamylase_N 219 356 IPR044505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02089 Cca-Chr3 41151732 41154767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02089 52 861 Glycoside Hydrolase AT1G03310 57.299 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02089 K01214 - gmx:100777953 1439.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02089 03 41151732 41154767 Cca03g02089 03 41151732 41154767 ECH