Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02088 ATGGCGGTTCCCGCGCAAACCAGCGAGGCTAACGCATGGGACGCAATCCTACGCCAAACGAAGGTGGCCGTGGAGGCCAACACCGATCCCAACGCCTGGGCCTCCGAAGTCACGTCCACGCTTCGCTCCGCCGCCATTTCCCTCCCTTCCGTCCAACTCGCTCACTGCCTCGTCTCTCACTTCTTTTGGGACAACCACTCCGCCGCCGCCTGGAAGCTTCTACACACCGCCACCTCCCTCAACCTCCTCCCTCGCTCCCTCCTCATCGCACTTCTCTCCTTCACGGTTGTTCCAAGCAGACAGGTCTACCCTATTGCTTACAGACTTTATATGGAACTCCTCAAGGAACTTGGCCTTATGCTTGAACAAGATATCAGTTCTCCAAACTATGAAAAGATTATGAAATCCATTGATGATGTTCTTCAGCTTTCTCAAGTATACAGTCAAAAGTTGTGGGAGCCAGGAGTTGTTCTGGTTGAATTTGTCTTTTCAATTGTATGGCAGTTACTTGAAGCATCATTAGATGATGAAGGGTTACTAGATCACACTACAGAGAATAAGCCTAGATGGATAATCAGGTCAGATTATATGAATATCGATGGATCATTAGATGATAAAAAGAAAACTGAACACACGGAAGGGTTTCAGAAGAAAAATACAGCAATGGCTATCGAAATCATTGCGGAGTTTTTTCAACACAAAATGACTTCAAGGATCCTTTCATTAGTTCATCGGAACATGTCATCACATTGGGGGTCTTTCATTCACCAAATGCAGCTGCTTGTATCAAACTCTTCAGTTTTTAGGAATTTGAAACATATTACTGCAAAGACCCTTTTGCTTTTGACGCAAAATATCCATGAGGTTGTTCCTCATGAGTTCAAAACAAAATCTAAGAGGGAGACTAATGTGGTCATACCTGCTTGTTCCCAAATGTCTTTTGCTAGTCAATCTTATGGTGATAGTTGGTCTTCGCTCTGGCTTCCTATTGATCTTATCCTGGAAGATGCTTCGGATGGAGGGCAAGTGGCAGCATTTAGTGCTGTTGAAATTATTACTGGTTTGGTGAAGACTTTACATGCAGTTAATGGCACTACGTGGCACAATACATTTTTGGGTTTATGGGTTGCAGCACTGCGTCTTGTTCAAAGGGAGAGGGATTCAAGAAAAGGTCCTATGTCTCGCCTTGATACCTGCATGTGTATGCTACTGGGCATTACAACCCTAGTGGTAACTCATATTATTGAAGAAGAGGAAGGTCAACTGATTGAAGAAGCTGAACACAGCCCTACAAATCAAGGGAAAGATCAGCAAGCTCTAGGGAAGTGTCGAGGTGAATTGATTACCAGCTTACAGCTATTGGGTGATTATGAATCCTTACTGACTCCACCTCAGTCTGTTATTGTGGAAGCCAATCAAGCTGCTGCCAGAGCTATTATGTTCTTATCGGGAAACCCTGTTGGTAGTGGATACTTCGAATATATGAGCACGAATGACATGCCAATGAAATTTTCTGGAAACTTACGGCATCTAATTGTTGAGGCATGTATTGCAAGAAATCTACTTGATACATCAGCTTATTATTGGCCTGGCTATGTGAATGCATGCAACAATCATATTCCATGGAGCATTTCTAATCATGTGTCTGGCTGGTCTTCGTTGATGGAGGGATCACAGCTAACTCCTGCATTGGTTAATGTCTTAGTTGCAACTCCAGCTTCCAGCTCAGCAGAGATTGAGAAAATATATGAAATTGCAACCAATGGTTCAGATGAAGAAAAGATATCTGCTGCTACCATTCTGTGCGGTGCATCTCTTGTACGTGGGTGGAGTGTACAGGAGCATACTGTTCTTTTTATCACAAAATTGCTCTCGCCACTAGTTCCTCCTACTTTCTCTGGGGTCGAAAGCCATTTGATCAGCCAAGCTCCATTTTTAAACGTTCTTCTTATTGGAATTTCGTCTATTGACCGTGTTCATATATTTTCGTTATATGGCTTGGTTCCATTACTTGCGGCAGGACTAATGATAATATGTGAGGTTTTTGGATCATGTGTTCCTGATGCCTCTTGGACTCTTGCAACCGGGGAAAAACTCACTCATTGGGAGGTATTCTCTAATGCATTTACTCTTTTGCTGAGGTTCTGGCGGTTTGATCATCTACCTGCTGAAACAAGGCTCAAAAGATGGTCAAAAATTTTAAGTCTTTCTGTAGAACCTGTATTTATGGATTCCTTTCCAAAATTAAACTTTTGGTATCGGAAACATAAAGAATGTATTGCTTCAATCCGCCCTGGTCTTGTGCCTGGAGAGCCTGTTCATCTGCTCGTTGATTCTCTACTAAGCATGATGTTTAGGAAGGTATGCAATGGTGCCGAACCTTTGACACCTACGACTTCAGGAAGCAGCAGTTCATCTGGGCTTGCATTGGATGATGCTTTAATGAAATTAAAAGTGCCTGCCTGGGATATCCTCGAAGCTATTCCCTTTGTGCTGGATGCTGCTCTGACATCTTGTGCTCATGGGAGACTCTCTACCCGTGAACTGGCTACAGGCCTCAAAGATCTAGCTGATTTTCTTCCAGCTTCTTTGGTTACCATTGCAAGCTACTTTTCAGCTGAAGTTACGCGGGGCATATGGAAGCCAGCTTTTATGAATGGAACTGACTGGCCCAGCCCTGCTGCAAATTTATCCCTTGTTGAGGAACAGATAAAGAAAATGTTGGCAGCCACTGGTGTCGATGTCCCAAGCCTTGCTGTAGATGGGAACTCTCCAGCTACACTTCCTTTGCCTTTGGCAGCTTTTGTTAGCCTCACAATAACATATAAGCTTGACAAGGCCGCTGAACGATTCCTTGCACTGATTGCCCCTGCTATGAGTGCCCTTGCTTCGGGTTGCCCCTGGCCCTCCTTGCCCATTGTGACGTCTTTGTGGATCCAAAAGGTGAAGCGTTGGAGTAACTACTTTGTACTTTCTGCCTCCAGAAATGTTTTCCACCAGAACAGGGATGCTGTAGTTCAACTACTAAAAAGTTGCTTCACCTCCACCCTTGGCCTTGGCTCTGGCTGCATTTATAATAATGGCGGTGTCAGTGCCCTCCTTGGTCATGGCTTATTTTCCCAAATATCCGATGGGATCTCTCCAGTTGCTCCAGGGGTTCTTTACCTAAGAGTGTACCGCTCTATTGGAGATATCACGTTATTGATTGAAGAAATTGTGCCTATTCTAATGCTTTCAGTTACAGATATAGCAACTAGTGATTTGGCCAAGGGGGGTGTAAAGAAACCAAAGAAAACCAAGTTTGGGATAAATCATGGGCAAGTTTCTCTTGCCAGATCCATGGCACGTGTCCAGCATGCCGCTCTACTCGGGGCCTCACTGGTTTGGATATCAGGTGGACCAAAGCTGGTTCAATACTTGATAAGCGAGATTCTGCCTTCCTGGTTTTTATCAGCTACCATGTTGGAGCAGGATGGTGGAGAATCTCGAGTTATGGTTGCCATGCTCAAAGGTTATGCACTGGCATTTTTTGTTTTTCTTAGCGCAGCATTTGCCTGGGGTATTGACAATTCGCTTTCACCAAAACGAAGGGCGAAGGTTGTTGGGTTGCATTTGGAATTTCTGGCAAGATCCCTTAACAGGAATATATCACTGCGTTGTCAATGTCATTGTGTTGCTTCGAAAGCCTATATATCAGGGTTAGTTAGTTTGATGGTAAGTCGCGCTCCATCTTGGGTCCAGGAAGTCGATGTGAACTTGTTGAAGAGACTGAGCTGGGGATTAAGACAGATAGATGAACATGAGTTGGCTCTTCGCCTTTTGGAAATCGGAGGTATCGGTGTCATGGGTGCAGCAGCTGAAATGATAATTGGATTTCAATATATATATTAA 3891 0.4428 MAVPAQTSEANAWDAILRQTKVAVEANTDPNAWASEVTSTLRSAAISLPSVQLAHCLVSHFFWDNHSAAAWKLLHTATSLNLLPRSLLIALLSFTVVPSRQVYPIAYRLYMELLKELGLMLEQDISSPNYEKIMKSIDDVLQLSQVYSQKLWEPGVVLVEFVFSIVWQLLEASLDDEGLLDHTTENKPRWIIRSDYMNIDGSLDDKKKTEHTEGFQKKNTAMAIEIIAEFFQHKMTSRILSLVHRNMSSHWGSFIHQMQLLVSNSSVFRNLKHITAKTLLLLTQNIHEVVPHEFKTKSKRETNVVIPACSQMSFASQSYGDSWSSLWLPIDLILEDASDGGQVAAFSAVEIITGLVKTLHAVNGTTWHNTFLGLWVAALRLVQRERDSRKGPMSRLDTCMCMLLGITTLVVTHIIEEEEGQLIEEAEHSPTNQGKDQQALGKCRGELITSLQLLGDYESLLTPPQSVIVEANQAAARAIMFLSGNPVGSGYFEYMSTNDMPMKFSGNLRHLIVEACIARNLLDTSAYYWPGYVNACNNHIPWSISNHVSGWSSLMEGSQLTPALVNVLVATPASSSAEIEKIYEIATNGSDEEKISAATILCGASLVRGWSVQEHTVLFITKLLSPLVPPTFSGVESHLISQAPFLNVLLIGISSIDRVHIFSLYGLVPLLAAGLMIICEVFGSCVPDASWTLATGEKLTHWEVFSNAFTLLLRFWRFDHLPAETRLKRWSKILSLSVEPVFMDSFPKLNFWYRKHKECIASIRPGLVPGEPVHLLVDSLLSMMFRKVCNGAEPLTPTTSGSSSSSGLALDDALMKLKVPAWDILEAIPFVLDAALTSCAHGRLSTRELATGLKDLADFLPASLVTIASYFSAEVTRGIWKPAFMNGTDWPSPAANLSLVEEQIKKMLAATGVDVPSLAVDGNSPATLPLPLAAFVSLTITYKLDKAAERFLALIAPAMSALASGCPWPSLPIVTSLWIQKVKRWSNYFVLSASRNVFHQNRDAVVQLLKSCFTSTLGLGSGCIYNNGGVSALLGHGLFSQISDGISPVAPGVLYLRVYRSIGDITLLIEEIVPILMLSVTDIATSDLAKGGVKKPKKTKFGINHGQVSLARSMARVQHAALLGASLVWISGGPKLVQYLISEILPSWFLSATMLEQDGGESRVMVAMLKGYALAFFVFLSAAFAWGIDNSLSPKRRAKVVGLHLEFLARSLNRNISLRCQCHCVASKAYISGLVSLMVSRAPSWVQEVDVNLLKRLSWGLRQIDEHELALRLLEIGGIGVMGAAAEMIIGFQYIY 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02088 1296 PANTHER OS07G0681500 PROTEIN 19 724 IPR039638 GO:0016592|GO:2000762
Cca03g02088 1296 PANTHER OS07G0681500 PROTEIN 725 1293 IPR039638 GO:0016592|GO:2000762
Cca03g02088 1296 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A 19 724 - -
Cca03g02088 1296 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A 725 1293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02088 Cca-Chr3 41135707 41150145 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02088 - - pvu:PHAVU_001G148600g 1805.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02088 03 41135707 41150145 Cca03g02088 03 41135707 41150145 ECH