Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02066 ATGAAGCCAGTGTGGAGATTCTCTTCAGACGCAAAACGAGCTCAGTTGTTGCTCTTCCAATTCCATTTCTATGGATTCTCAAACCCCAAAACCATTCCCTCCTTCACCAGCGTGCCATATCGTGGGTTCACGCGCAAGTTCTGCACCGAGTCAAACAATGTCTCTGACCTTATTCCCTTGTTCACTGCAAAAGCTTGCACTACAGCCAGAGAGCGTCTCATCAACAAGGTCAGGATTCTGAAGAACGAGCTGCTTCGCGAATCCTCCGAGGCTGGTAGGGTTCACAGCATTTTGGACGAGTATTCTGACACTTTGAATCTCCGTTACGCCAGTGGATCTGTGTTTATCGAGCTCATGAATCAGTTGGATTCAAAGCCTTCCGTCGCACTCCAGGTGTTTAATTGGAGAAGAAAGAAATCTAGTGTTGAAAACCCTATGGATGCGTACGAGTACTCAAAGGGTATAAAAGCTGCAGGTAGATCTGCGAATATTGAATTTGCTGTTATGCTATTTAAGGAGGCTGCCATCAAAGGCATCAAGAAGACCATCACTTACAATGCACTAATGAGTGTTTTTATGGTCAATGGTCTTGCTGATTGGTGCCAGTCCTTGTTTTGTGATTTGAAGAGGGATCCGACTTGTGATCCTTCTATTGCCACGTACAATATTCTTATATCTGTTTTTGGTGGCTTGATGCTGGTTGATCACATGGAGGCAACATTCCGCGAGATACAAAAGTTGGACCTCGCCATGAACATCTACACTTATAATTATTTAATTGCTGGATATCTCACGGCTTGGATGTGGGATGATATGGAAAAGGTGTTTCAAATGTTGATGTCAGGCCCTGTTGAGCCTAACATGAAAACCTACATGCTAATGCTTCGTGGGTATGCAAATTCAGGTAATTTGGATAAGATGGAAGAGATGTATTCCCTTGTAAGTGATCATGTAAATGAAAATGGATTTAAATTAATAAGTTGTATGATATGTGCCTATAGTAAAAGTTCTGAAGTAGATAGACTAGAGAAGATAGAGGCATTGATGAAGTTTATTCCAAAAGAAGATTACAGGCCATGGTTAAATGTTTTGTTGATTAAACTCTATGCCAAGGAAGACTGTTTAGAGAAAATGGAGAATGCAATAAATGAGGCATTTCAGCATGGAACCTCCATAACAACCAACAGTATTATGAGATGCATAATTGCAACTTATTTTCGGTGCAATGCAGTAGAAAAGCTAGAAAGTTTTGTTAGACGTGCTGAAATCTCTGGGTGGGTAATCTGTCGTTCCTTATATCATTGTAAGCTGGTCATGTATGGGTCACAGGGGCCCTTAATTGCAATGCATAATGTCCTTCAGGAGATGGAAAATGTCAAGCTTGATTGCACAAAGAAAACGCTATGGATAATGTACAAAGCTTACATGAGCCGTGGCCAGGGTTCCATGGTTTTAAAAACATTGGGACAAATGTTCAAGCATGGTTATGAAGTTCCCTTGGGTGCATTTCCATCATAA 1518 0.4124 MKPVWRFSSDAKRAQLLLFQFHFYGFSNPKTIPSFTSVPYRGFTRKFCTESNNVSDLIPLFTAKACTTARERLINKVRILKNELLRESSEAGRVHSILDEYSDTLNLRYASGSVFIELMNQLDSKPSVALQVFNWRRKKSSVENPMDAYEYSKGIKAAGRSANIEFAVMLFKEAAIKGIKKTITYNALMSVFMVNGLADWCQSLFCDLKRDPTCDPSIATYNILISVFGGLMLVDHMEATFREIQKLDLAMNIYTYNYLIAGYLTAWMWDDMEKVFQMLMSGPVEPNMKTYMLMLRGYANSGNLDKMEEMYSLVSDHVNENGFKLISCMICAYSKSSEVDRLEKIEALMKFIPKEDYRPWLNVLLIKLYAKEDCLEKMENAINEAFQHGTSITTNSIMRCIIATYFRCNAVEKLESFVRRAEISGWVICRSLYHCKLVMYGSQGPLIAMHNVLQEMENVKLDCTKKTLWIMYKAYMSRGQGSMVLKTLGQMFKHGYEVPLGAFPS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02066 505 Gene3D Tetratricopeptide repeat domain 356 500 IPR011990 GO:0005515
Cca03g02066 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Cca03g02066 505 PANTHER EXPRESSED PROTEIN 2 504 IPR044179 GO:0003729
Cca03g02066 505 Pfam Pentatricopeptide repeat domain 170 230 IPR002885 -
Cca03g02066 505 Gene3D Tetratricopeptide repeat domain 247 316 IPR011990 GO:0005515
Cca03g02066 505 Gene3D Tetratricopeptide repeat domain 71 246 IPR011990 GO:0005515
Cca03g02066 505 Coils Coil 70 90 - -
Cca03g02066 505 PANTHER OS05G0407900 PROTEIN 2 504 - -
Cca03g02066 505 Pfam PPR repeat family 252 300 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02066 118 342 Miscellaneous Gene Families AT4G11690 26.296 9.63e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02066 - - gmx:100816768 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02066 03 40904605 40907054 Cca03g02066 03 40904605 40907054 ECH