Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02061 ATGAGTTCCAGCGAAGCAGTTGGCACCACGAAGAAGGGCGGAAGAGGCAAGCCAAAGACCTCAAAGTCGGTCTCCAGGTCGGCCAAAGCCGGGCTCCAATTCCCCGTCGGCCGTGTCGCTCGTTACCTGAAGGCCGGCCGCTACGCCCAGCGCGTGGGCTCCGGTTCCCCCGTTTACCTCTCTGCAGTTCTGGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCGGGGAACGCTGCGAGGGACAACAAGAAGAGTCGGATCATTCCCAGGCATATTCAGCTTGCGGTGAGGAACGACGAGGAATTGAGCAAGCTTATGGGGTCTGTGACTATTGCAAACGGTGGCGTTTTGCCCAACATTCACCAGAATTTGCTGCCGAAGAAGGCCGGGAAGGGCAAGGGCGAGATCGGATCTGTTAGTCAGGAATTTTAG 432 0.5764 MSSSEAVGTTKKGGRGKPKTSKSVSRSAKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIANGGVLPNIHQNLLPKKAGKGKGEIGSVSQEF 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02061 143 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca03g02061 143 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca03g02061 143 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca03g02061 143 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca03g02061 143 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca03g02061 143 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca03g02061 143 Pfam Core histone H2A/H2B/H3/H4 11 97 IPR007125 GO:0003677
Cca03g02061 143 Gene3D Histone, subunit A 8 135 IPR009072 GO:0046982
Cca03g02061 143 Pfam C-terminus of histone H2A 100 133 IPR032454 -
Cca03g02061 143 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
Cca03g02061 143 PANTHER HISTONE H2AXA-RELATED 8 141 - -
Cca03g02061 143 CDD H2A 11 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca03g02061 143 PANTHER HISTONE H2A 8 141 IPR002119 GO:0000786|GO:0003677|GO:0030527
Cca03g02061 143 MobiDBLite consensus disorder prediction 1 29 - -
Cca03g02061 143 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02061 Cca-Chr3 40866328 40867241 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02061 K11251 - gmx:100787899 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02061 03 40866328 40867241 Cca03g02061 03 40866328 40867241 ECH