Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02060 ATGGAATCGTGTTCCTCCATGCACCAACTGAGGCAGATTCAAGCACGCATGACTCTCACCGGCCTCATCACCCACACCTTCCCCCTCAGCAGACTCCTCGCTTTCTGcgccctcgccgacgccggcgacctccgccacgcccacCGTCTCTTCCGCCGCATCCCCCACCCCAACACCTTCATGTGGAACACCATGATCCGAGCCTACCTCAAAGCCCGAATCCCCACCACCGCCTTCTCCTTCTTCCTCCACATGCTTCAACGAGAAATTCCGTTGGACTCCAAAACCTTCCTTTTCGCGCTCAAGGCCTGCGAGCTCTTTTCGCGGCCCTCCCACGGGGAATCCGTGCATTGCCTCGTTCGGAAGATGGGTTTTGATTCTGAGTTGCTCGCGCGAAATGGGttggtgcgattttacgctgaacgtggttggttgaaacacgcgcgccaggtgttcgacgaaatgtctgttaaggatgttgttacttggaccatcatgattgatgggtATTCGGGTTACGACTTTTCAGATGAGGCTTTGGAGTTGTTTGGTTTGATGCTGGCCGGTGATGTTGAGCCCAATGAAGTCACGTTGATTGCGGTGCTTTCAGCATGCTGTCAGAAGGGTGACCTTGGTATGGGGAAACGCGTTCATGAAATTATGGAGAGGGGAAATGTGAGGTGCTGTTTGAGTTTGCACAATGCTTTGTTGGATATGTATGTGAAATGTGGGAGTTTGATGGCTGCTAGGGAGCTTTTTGACGGAATGGAAACTAGGGATGTTTTCTCGTGGACTAGCATGGTTAATGGGTATGCTAAATGCGGCGACTTGGAGTCTGCGAGGAAGTTTTTCGATCAAACTCCTCGCAAGAATGTGGTCTGCTGGAGTGCGATGATTGCGGGATATTCTCAGAATGACAAACCCGAGGAATCATTAAAATTGTTTCATGAAATGATTGGAGAAGGTTTAGTTCCAGTCGAGCATACCTTAGTGAGTGTGCTCTCTGCCTGTGGCCAGCTGAGTTGCTTGAGTTTGGGTCATTGGATTCATCAATATTTTGTTGATGGTAAAAGAATGCCACTTAGTGTTACTTTGGCAAATGCCATTATAGATATGTATGCTAAATGTGGAAGGATAGATGCAGCCGCGGAAGTCTTCAGTGCAATGTCGGAGAAAAATCTGGTTTCTTGGAATTCTATGATTTCAGGGTATGCTGCCAATGGTCAATCAAAGCAAGCTGTTGAAGTTTTTGATAAGATGAGGAATATGGGATTAAAGCCTGACGATATTACGTTTGTGAGTTTGTTGACAGCTTGCAGTCACGGTGGCTTGGTTTCTGAAGGTCAAGAATACTTTGACACCATGGAAAGAAACTATGTGGTAAAACCCAAAAGGGTACATTATGCTTGCATGATTGATCTACTAGGTAGAACAGGGTTCCTGGAAGAAGCTTACAGATTAATAACAAACATGCCAATGCAACCTTGTGAGGCTGCTTGGGGTGCTCTTCTAAGTGCTTGTAGAATGCATGGTAATGTTGAGCTGGCAAAAATTTCTGCTCTTAATCTTTTAAGCTTGGATCCGGAAGACAGTGGCATTTATGTGCTGCTGGCAAATATTTGTGCTAATGAGAGAAAATGGGGTGATGTAAGAAGGGTGCGGTCTTTGATGAGAGACAAGGGTGTGAAGAAGATTCCTGGTCATAGTTTAATAGAGATAGATGGGGAATTTAAAGAATTTTTGGTGGCAGATGAATCCCACCCTCAATCTGAGGAGATCTATAAAGTATTAGAAGAAATATTTTTGTTGTCAAAATTGGAAGACTTTGCCTGCGAGTTATAG 1842 0.418 MESCSSMHQLRQIQARMTLTGLITHTFPLSRLLAFCALADAGDLRHAHRLFRRIPHPNTFMWNTMIRAYLKARIPTTAFSFFLHMLQREIPLDSKTFLFALKACELFSRPSHGESVHCLVRKMGFDSELLARNGLVRFYAERGWLKHARQVFDEMSVKDVVTWTIMIDGYSGYDFSDEALELFGLMLAGDVEPNEVTLIAVLSACCQKGDLGMGKRVHEIMERGNVRCCLSLHNALLDMYVKCGSLMAARELFDGMETRDVFSWTSMVNGYAKCGDLESARKFFDQTPRKNVVCWSAMIAGYSQNDKPEESLKLFHEMIGEGLVPVEHTLVSVLSACGQLSCLSLGHWIHQYFVDGKRMPLSVTLANAIIDMYAKCGRIDAAAEVFSAMSEKNLVSWNSMISGYAANGQSKQAVEVFDKMRNMGLKPDDITFVSLLTACSHGGLVSEGQEYFDTMERNYVVKPKRVHYACMIDLLGRTGFLEEAYRLITNMPMQPCEAAWGALLSACRMHGNVELAKISALNLLSLDPEDSGIYVLLANICANERKWGDVRRVRSLMRDKGVKKIPGHSLIEIDGEFKEFLVADESHPQSEEIYKVLEEIFLLSKLEDFACEL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02060 613 Gene3D Tetratricopeptide repeat domain 107 219 IPR011990 GO:0005515
Cca03g02060 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Cca03g02060 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 290 IPR002885 -
Cca03g02060 613 Gene3D Tetratricopeptide repeat domain 346 583 IPR011990 GO:0005515
Cca03g02060 613 Gene3D Tetratricopeptide repeat domain 1 106 IPR011990 GO:0005515
Cca03g02060 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 392 IPR002885 -
Cca03g02060 613 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 2 272 - -
Cca03g02060 613 SUPERFAMILY TPR-like 275 546 IPR011990 GO:0005515
Cca03g02060 613 Pfam PPR repeat family 392 440 IPR002885 -
Cca03g02060 613 Pfam PPR repeat family 57 104 IPR002885 -
Cca03g02060 613 Pfam PPR repeat family 158 207 IPR002885 -
Cca03g02060 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Cca03g02060 613 TIGRFAM PPR: pentatricopeptide repeat domain 61 93 IPR002885 -
Cca03g02060 613 TIGRFAM PPR: pentatricopeptide repeat domain 262 292 IPR002885 -
Cca03g02060 613 TIGRFAM PPR: pentatricopeptide repeat domain 395 428 IPR002885 -
Cca03g02060 613 TIGRFAM PPR: pentatricopeptide repeat domain 293 325 IPR002885 -
Cca03g02060 613 TIGRFAM PPR: pentatricopeptide repeat domain 161 195 IPR002885 -
Cca03g02060 613 TIGRFAM PPR: pentatricopeptide repeat domain 367 394 IPR002885 -
Cca03g02060 613 TIGRFAM PPR: pentatricopeptide repeat domain 233 261 IPR002885 -
Cca03g02060 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Cca03g02060 613 Pfam E+ motif 579 600 IPR046849 -
Cca03g02060 613 Gene3D Tetratricopeptide repeat domain 220 287 IPR011990 GO:0005515
Cca03g02060 613 Gene3D Tetratricopeptide repeat domain 288 345 IPR011990 GO:0005515
Cca03g02060 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Cca03g02060 613 Pfam PPR repeat 233 260 IPR002885 -
Cca03g02060 613 Pfam PPR repeat 466 491 IPR002885 -
Cca03g02060 613 Pfam PPR repeat 262 291 IPR002885 -
Cca03g02060 613 Pfam PPR repeat 293 323 IPR002885 -
Cca03g02060 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 58 92 IPR002885 -
Cca03g02060 613 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 271 607 - -
Cca03g02060 613 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 271 607 - -
Cca03g02060 613 Pfam E motif 510 572 IPR046848 -
Cca03g02060 613 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02060 Cca-Chr3 40860325 40862657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02060 15 600 Glycoside Hydrolase AT3G49170 31.886 1.44e-95 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02060 - - ccaj:109796361 1243.8