Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02059 ATGGCCAAAACCACCCTCTTCATCAGCTTTAACCTTTCTCTACTCTTTTCTCTTGTCACTGCCACTTACTATTCGAGTCTAGGCCCGACACTAATGGGCTTCGGGGAGGACAAGTTCACCCACCTTCACTTCTACTACCACGATATCGTGTCGGGCCCAAACCCCAGCATGCTGCTGGTGGCGGAGCCGAACGGGAAGGCGATAGATACCCTTCCGTTCGGAACCGTTGTGGCGATGGACGACCCGCTGACGACAGGCCCAGAACGCGAGTCGAAGCTGGTGGGAAAGGCCCAAGGACTTTACGCGTCGATATCGCAGGGGGAGCTGGGGCTTATGATGGTGATGACGATGGCGTTTTCAGATGGAGAATTCAACGGCAGCACCATAAGCGTGTTGGGAAGGAACATGATCATGAGTGAGCCTGTTAGGGAGATGCCTATTATTGGCGGCACGGGTGCTTTTCGCTTCGCACGTGGCTATGCTCAAGCCAAGTTTTACTCCGTCGATTTCACCAAAGGGGATGCTACCGTCGAATATGACATCTTCGTCAACCATTATTATTAA 564 0.5266 MAKTTLFISFNLSLLFSLVTATYYSSLGPTLMGFGEDKFTHLHFYYHDIVSGPNPSMLLVAEPNGKAIDTLPFGTVVAMDDPLTTGPERESKLVGKAQGLYASISQGELGLMMVMTMAFSDGEFNGSTISVLGRNMIMSEPVREMPIIGGTGAFRFARGYAQAKFYSVDFTKGDATVEYDIFVNHYY 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02059 187 Gene3D - 34 177 IPR044859 -
Cca03g02059 187 PANTHER NUCLEOPORIN-RELATED 7 185 IPR004265 -
Cca03g02059 187 PANTHER DIRIGENT PROTEIN 7 185 - -
Cca03g02059 187 Pfam Dirigent-like protein 40 183 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02059 Cca-Chr3 40844887 40845450 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02059 - K25075 gmx:100817686 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02059 03 40844887 40845450 Cca03g02059 03 40844887 40845450 ECH