Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02044 ATGGAGGAAGAAGAAGACCAACAGAAGCTTCCAGATCTGGTGAAGGAACTCGTCCAACGCTTACTATCGCAAAACCTCCCTCCAAACTCCCCTCCCCTAAACCCTAACTCCCCCGAATTCATCAACTCCCTCCGCTACGCCCACCGCATCCTCTCCAgccgcctcaccccctccgtcgcccccgacgccgccgccatcgccgactccatcaagcgccgcctcgccgcccacgccCGCTCCTCCGAGGCCCTCTCCTTCGCGGACCTCTTCTCCAAATTCGCCCACAAGGCCCAAAGCGTCAACAACAAATGGGCCGTCATTTACCTCCTCAAAATCATCTCCGAAGACCGCCACCACAGCCACCACCAACCGCCCCCTCTCCTCCCCAACCTCGCCTTCTCCCAACCCGCCACACACCACCACAAACCCTGGACCAACGGCGCCCTCTTAATCTCCAAGGATCCCGACAACCGCCGCGACGTCGCGTTTCGCGACTTCGTCGCTTTCGTCAGAGAAGAGAACGAGGTCTCCGAGGAGGCTCTCGTCAGGGACGTGCTCTACGCGTGCCAAGGCGTCGACGGTAAGTTCGTCAAATTCGAGAGCGAGAGTAAGCGTTACGCGGTACCCGATTCTGTTAGGGTTCCGAGAGCCACTAGGAGTATTGTTCACAGCCTCTGTGAATTAGGGGTTTTGTTTAGGAATGTTAGTGGTTACATTTCGCAGAGCATGGATCGGTTTCCCGCTGAGGATGTGGGAACTGTAGGGCAGGCTTTTTGCTCTGCTTTGCAGGATGAGCTTAGTGAGTATTATAAGTTGTTGGCGGTTCTTGAAGCTCAGTCTTCCAACCCCATTCCCTTGGTGTCTGAATCCGCCACCTCCGGGAACTATCTTTCCCTGCGGAGGTTGGCGGTTTGGCTTGCTGAGCCCATGGTCAAGATGAGGCTGATGGCTGATTTGGTTGAGAAGTGTAGGGTTTTGCGCGGCGGCGCCATGGCGGGGGCGATTCATTTGCACGCGCAGCATGGTGATCCCTTGGTGCATGAGTTCATGAGGAGGTTGTTGCAGCGGGTGTGTTCTTCGCTGTTTGAGATGGTGAGGAGGTGGGTTTTGGAAGGGGAGTTGGAGGATATCTTTGCTGAGTTTTTCATTGTTGGGCAGCCGGTGAAGGCAGAGTCTCTTTGGAGAGAAGGGTATAGACTCCATGATGCGATGCTTCCTTTGTTCATATCGCCTTCTCTTGCACAGAGGATCTTGAGGACTGGCAAGTCAATTAATTTTCTTCGCGTTTGTTGTGAGGATCGTGGTTGGGCGGATGCTGCTACTGAGGTTGTCGATGATAAGGGAGCAGCATCGAGAAGAGGTGGTTTTGGATATGGTGAAACAGATACGCTTGAGTTTTTGGTGGATGAAGCTGCAAAAAGGATCGACAAGCATCTATTGGATGTGATTTTCAAGAGGTACAAGTTTAAAGAACACTGTCTTGCGATTAAGCGGTATTTGTTGCTTGGACAAGGTGATTTTGTGCAGTATCTGATGGATATTGTTGGGCCTGAGCTTTCTGAGCCGGCTAACACTATCAGCTCTTTCAAACTCTCGGGATTGCTGGAAACTGCAATTCGGGCATCTAATGCTCAGTATGATGATCCTGACATTTTGGATAGGCTCAGGGTTAAGATGATGCCACATGAAAGCGGTGACAGGGGCTGGGATGTATTTTCACTAGAATATGATGCAAGAGTTCCACTGGATACTGTGTTCACAGAGTCTGTGATGGCAAGGTATTTAAGAATTTTTAATTTTCTGTGGAAGCTTAGAAGAGTGGAACATGCACTTACTGGAACCTGGAAGACTATGAAACCAAACTGCATTACTTCTAATTCCTTCACCAGATTACAGCATGCAGTAAAGATGCAGTTGGTTTCAACATTGAGGCGCTGTCAGGTTCTTTGGGTCGAAATTAATCACTTCATTTCAAACTTGCAATATTATATAATGTTTGAAGTTTTGGAGGTATCATGGTCAAATTTTGTGAGTGAGATGGAAGTAGCTGAGGATCTTGATGACCTACTTGCAGCCCATGAGAAATATCTGCATTCAATTGTAGAGAAATCTCTCCTTGGAGAGCTTTCCCAGTCTCTTTCCAAGTCACTATTTGTAATTTTTGATCTTATATTACGTTTTCGGAGCCGTGCGGATCGGTTGTATGAAGGTATTCATGAGTTGCAAGCAAGAATGACAGAGTCCTCCTCATCCTCTCGAGACCAGAATAAATCAAGAACACGAAAGCAACTGACAGATAAATCTGCAGAACAAGGATCCTGGATTGCTGATGGGAGGAAAGCCCTAACACAACGAGCTGGTGAATTTCTAAGGAATATGGGACAAGATCTGGATGCAATTGCCAAGGAGTACTCATCATTGCAAGAGGAATTCATTTCTCAGTTGCCTGTACAGCAGCATGTTGATCTAAAATTTCTCTTTTTCCGCCTTGATTTCAACGAATTTTATAGGCGGTTGTGTCCTAGCATGTAG 2532 0.4645 MEEEEDQQKLPDLVKELVQRLLSQNLPPNSPPLNPNSPEFINSLRYAHRILSSRLTPSVAPDAAAIADSIKRRLAAHARSSEALSFADLFSKFAHKAQSVNNKWAVIYLLKIISEDRHHSHHQPPPLLPNLAFSQPATHHHKPWTNGALLISKDPDNRRDVAFRDFVAFVREENEVSEEALVRDVLYACQGVDGKFVKFESESKRYAVPDSVRVPRATRSIVHSLCELGVLFRNVSGYISQSMDRFPAEDVGTVGQAFCSALQDELSEYYKLLAVLEAQSSNPIPLVSESATSGNYLSLRRLAVWLAEPMVKMRLMADLVEKCRVLRGGAMAGAIHLHAQHGDPLVHEFMRRLLQRVCSSLFEMVRRWVLEGELEDIFAEFFIVGQPVKAESLWREGYRLHDAMLPLFISPSLAQRILRTGKSINFLRVCCEDRGWADAATEVVDDKGAASRRGGFGYGETDTLEFLVDEAAKRIDKHLLDVIFKRYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLSGLLETAIRASNAQYDDPDILDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMARYLRIFNFLWKLRRVEHALTGTWKTMKPNCITSNSFTRLQHAVKMQLVSTLRRCQVLWVEINHFISNLQYYIMFEVLEVSWSNFVSEMEVAEDLDDLLAAHEKYLHSIVEKSLLGELSQSLSKSLFVIFDLILRFRSRADRLYEGIHELQARMTESSSSSRDQNKSRTRKQLTDKSAEQGSWIADGRKALTQRAGEFLRNMGQDLDAIAKEYSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYRRLCPSM 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02044 843 Pfam Gamma tubulin complex component N-terminal 182 485 IPR041470 -
Cca03g02044 843 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 140 831 - -
Cca03g02044 843 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 32 119 - -
Cca03g02044 843 Coils Coil 790 810 - -
Cca03g02044 843 Coils Coil 259 279 - -
Cca03g02044 843 Pfam Gamma tubulin complex component C-terminal 491 836 IPR040457 GO:0043015
Cca03g02044 843 Gene3D - 490 835 IPR042241 -
Cca03g02044 843 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 140 831 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Cca03g02044 843 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 32 119 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Cca03g02044 843 MobiDBLite consensus disorder prediction 746 770 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02044 K16570 - gmx:100784710 1508.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02044 03 40627308 40630747 Cca03g02044 03 40627308 40630747 ECH