Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02013 ATGACGGAACCAACCCAGCCTTCCACGTCATCCCCAAGCACCGTGATTCACCCAAGGCGTGAGCCCTTCGAGCACGGCCTCTTGCCAATCCCCCGCCTCATCTTCTCCGACCCCGCCCAAACCCTAATTCCCTTGAAGCACAAGCTTCTACAGCTATCCTCCAACCACCGTGTCCACTCCGCCGCCATCTCCGACGCCCTTCAGATCTCCATTGAGCACGCCACCCTCGTCCTCGATACCCTCGCCTCGGTTCTCCACTCCGACGCCGAACCTCTCGTCACCGCCAACCTCGACCAAATCGACTCCGTGGGCGTCGACGTTCATGATCTGCTCTTGTTCCTCTACATTCAATCCTACAAGAAGCTTCTCCCCCGCACGCACAAGGATTCCGCCACTGTCGCCGACGTCTGGCCTTCCACTTCCGCCTTCGACGGCTACTTGTCCGCCCTCTCCCCGCTCCAGCTTGTACGCAGCAACAGTAGGCGGTTTACGCCATCACAGGCTGATGAAGAGGCGCATCAGTTGTCGTACTTGCAAAAGCATTTGGCTAACATTCTGTCTCTTCTAGCAGAGCCTGTAGAGGGAGAAGGCGAAGAGTCTCTGGTTTTATCTATGGATAGATTCGAGCATCTTGGGTTTCTAATTCATTTTGGTGATAAGGGATCCGAAGGAAACTCTTTTAGTCAATGTTCTCCTTTTTTTGCAAACTCAGACCCTGACATGCCTGCAGTTCCTGTTCCTGCTGCACAAGTTCATGACTGGCTTCTGCAGAATATAGCTGCTGCTTTGGAATATATTTCTGAACGGACTTCTTCAAAGGAAAATGGCCCAGCTAGTGCCTCTGATCAGGATGTTGCAATGACTGATGCAAACACCGTCTCAGTTAAGGTCTCAACAAATACTAGAGGTGCAAGTTTCATTGAAGGGATCTCTAAATCGTCATATGCAAAGAATGCATCTGATATTAAAGGTTCCTCTGTTAAGGTTCTAAATTGCCACGAGTCTGCCATCTACATCCTAGCACCATTGAGATATGCCACCGTCTATGGATGTTCAGATGCAACTATAGTTCTTGGAGCAGTTGGCAAGGCTGTGAGAGTAGAACACTGTGAACGAGTACATGTAATTGTAGCAGCGAAACGCATTTGTATTGCTAATTGCCGTGAATGTGTTTTCTTTTTGGGAGTAAATCAGAAGCCACTTATTCTTGGTGATAACCATAACCTGCAGGTGGCTCCCTATAATACTTTTTACTCCCAATTGGAGGAGCATATGAGTGAAGTTGGAATTGTGCCCATGGTGAACCGATGGGATGAACCTCTAGCATTGGGCATGGTTGACCCCCATGATTCATTATCTCATCCAGCAGGTGTCTCTGATGTTCAAGCTGAGTCTGCTACACAGTTGGACCCTGATCAGTTCACTAATCTTGTGGTAGGGACGAAATTCTTGTACTTACAGGGAAAATGA 1470 0.4898 MTEPTQPSTSSPSTVIHPRREPFEHGLLPIPRLIFSDPAQTLIPLKHKLLQLSSNHRVHSAAISDALQISIEHATLVLDTLASVLHSDAEPLVTANLDQIDSVGVDVHDLLLFLYIQSYKKLLPRTHKDSATVADVWPSTSAFDGYLSALSPLQLVRSNSRRFTPSQADEEAHQLSYLQKHLANILSLLAEPVEGEGEESLVLSMDRFEHLGFLIHFGDKGSEGNSFSQCSPFFANSDPDMPAVPVPAAQVHDWLLQNIAAALEYISERTSSKENGPASASDQDVAMTDANTVSVKVSTNTRGASFIEGISKSSYAKNASDIKGSSVKVLNCHESAIYILAPLRYATVYGCSDATIVLGAVGKAVRVEHCERVHVIVAAKRICIANCRECVFFLGVNQKPLILGDNHNLQVAPYNTFYSQLEEHMSEVGIVPMVNRWDEPLALGMVDPHDSLSHPAGVSDVQAESATQLDPDQFTNLVVGTKFLYLQGK 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02013 489 Gene3D - 304 472 IPR016098 -
Cca03g02013 489 SMART carp 370 404 IPR006599 -
Cca03g02013 489 SMART carp 332 369 IPR006599 -
Cca03g02013 489 ProSiteProfiles C-CAP/cofactor C-like domain profile. 277 430 IPR017901 -
Cca03g02013 489 PANTHER BNAC04G02540D PROTEIN 10 483 - -
Cca03g02013 489 Pfam Tubulin binding cofactor C 324 439 IPR012945 -
Cca03g02013 489 PANTHER UNCHARACTERIZED 10 483 IPR039589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02013 Cca-Chr3 40254682 40261520 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02013 K16810 - gmx:100801317 853.588