Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02012 ATGACGGAACCAGCGGAGCCATGCACGTCTTCCTCATTGGCGAGGGACCCAAGCACCGTGATTCACCCGCGGCGCGAGCCCTTCGAGCACGGCCTCTTGCCAATCCCGCGCCTCATATTCTCCGACCCCGCGCAAACCCTAATTCCCTTGAAGCACAAGCTTCTGCAATTATCCTCCAATCACCGAGTCGACTCGGCGGCCATATCCGAGTCACTGCAGATCTCCATTGAGCACGCCAGACTCGTCCTCGATACGCTCGCCTCGATTCTCCCCTCCGACGCCGAACCTCTCGTCGCCGCCAACCTCGGCGAAATCGACTCCGTCGGCGTTGACGTCCATGATCTGGTTCTCTTCCTCTACATTCAATCCTACAAGAGGCTCCTCCCGCGCACGCACAAGGACTCCGCCGCCGTCACCGACGTTTGGCCTTCCACATCCGCCTTCGACGGCTACTTGTCCGCCCTCTCCCCGCTGCAGCTTGTACGCAGCAACAGTCGGCGGTTTATGCCATCACAGACTGATGAAGAGGCGCATCAGTTGTCGTATTTGCAGAAACACTTGGCTAACATTCTGTCTCTTCTAGCAGAGCCTGTGGAGGGAGAAGGAGAAGAATCTCTGGTTTTAACCATGGATAGATTTGAGCACCTTGGATTTCTAATTCAGTTTGGTGATAAGGGATCTGGAGGAATTTCTTTGAGTCAATCTTCTCCCTTTTTTGCAAACTCAGACCCTGACATGCCTGCTGTTCCTGTTTCTGCTGGTCAAGTTCATGATTGGATTCTACAGAATATAGCTGCTGCTTTGGAATATATTTCTGAAAAGACTTCTTCAAAGGAAAATGGCCCTGCCAGTGCCTCTGATCAGGATGTTGCCATGACTGATGCAAGCACCGTTCCAGTTAAGGTCTCAACAAGTACTAGAGGTGCAAGTTTCATTGAAGGGATCTCAAAAGCTTCATATGTGAAGCATGCGGCTGACATTAAAGGTTCCTCTGTGAAGGTTTTAAATTGCCACGAGTCTGCCATATACATCTTAGCACCTTTGAGATATGCCACTGTCTATGGATGTTCTGATGCAACAATAGTTTTAGGAGCAGTTGGCAAGGCTGTGAGAGTAGAACACTGTGAACGAGTTCATGTAATTGTAGCAGCAAAACGTATTTGTATTGCAAATTGTCGTGAATGTGTTTTCTTTTTGGGAGTGAATCAGCAACCTCTTATTGTTGGTGACAACCATAAACTGCAGGTGGCCCCCTATAATACTTTTTACTCCCAATTGGAAGAGCATATGAATGAAGTTGGAATTTTGCCCACAGTTAACAGATGGGATGAGCCTCTGGCATTGGGCATGGTTGATCCCCATGATTCATTATCTCATCCAGCAGGTGTCTCTGATGCTCAAGCTGAGTCTGCTACACATGTGGACCCTGATCAGTTTACTAATTTTGTGATTCCAAACTGGTTTGGAGGAGAGTCAACTGGGGCTACGAAAGGGAACCCATTCACTTTACCAGATGTTTATATGGCATCTCATCTTAAAAATCAAAAAAATTTAGGAGAAATAAAGCAACTCTTACGCGAAGCACCTTTAGAAGAAAGTCGCAAACGAGAATTGTCATCTGCACTCCATGTGTATTTCAGGGACTGGTTATATGCTTCGGGAAACATTCGTCAGCTTTATTGTCTACAAGGTGATTGA 1698 0.4764 MTEPAEPCTSSSLARDPSTVIHPRREPFEHGLLPIPRLIFSDPAQTLIPLKHKLLQLSSNHRVDSAAISESLQISIEHARLVLDTLASILPSDAEPLVAANLGEIDSVGVDVHDLVLFLYIQSYKRLLPRTHKDSAAVTDVWPSTSAFDGYLSALSPLQLVRSNSRRFMPSQTDEEAHQLSYLQKHLANILSLLAEPVEGEGEESLVLTMDRFEHLGFLIQFGDKGSGGISLSQSSPFFANSDPDMPAVPVSAGQVHDWILQNIAAALEYISEKTSSKENGPASASDQDVAMTDASTVPVKVSTSTRGASFIEGISKASYVKHAADIKGSSVKVLNCHESAIYILAPLRYATVYGCSDATIVLGAVGKAVRVEHCERVHVIVAAKRICIANCRECVFFLGVNQQPLIVGDNHKLQVAPYNTFYSQLEEHMNEVGILPTVNRWDEPLALGMVDPHDSLSHPAGVSDAQAESATHVDPDQFTNFVIPNWFGGESTGATKGNPFTLPDVYMASHLKNQKNLGEIKQLLREAPLEESRKRELSSALHVYFRDWLYASGNIRQLYCLQGD 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02012 565 Gene3D - 309 474 IPR016098 -
Cca03g02012 565 Pfam Tubulin binding cofactor C 329 444 IPR012945 -
Cca03g02012 565 SMART carp 337 374 IPR006599 -
Cca03g02012 565 SMART carp 375 409 IPR006599 -
Cca03g02012 565 ProSiteProfiles C-CAP/cofactor C-like domain profile. 299 435 IPR017901 -
Cca03g02012 565 PANTHER UNCHARACTERIZED 3 565 IPR039589 -
Cca03g02012 565 PANTHER CYCLASE-ASSOCIATED PROTEIN CAP/SEPTUM FORMATION INHIBITOR MINC-RELATED 3 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02012 Cca-Chr3 40241527 40253661 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02012 K16810 - gmx:100819271 1041.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02012 03 40241527 40253661 Cca03g02012 03 40241527 40253661 ECH