Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01996 ATGGACAACCCAATCCTCTTCCTCTTACTATTCCTTCTCACCCCATCGCATCTCGCCACGTCAGACCCTCTAAACCCCCTCACAATCACGCTCTCCGTCGCCGATTACGGCGCCACCGGCGACGGCCTCCGCTACGACACGGATGCGATCCAGTCCGCCATCAACTCCTGCCCGGAGGGCGGTCCCTGCCGCGTCACCTTCCCGGCGCCGGGAAAATACCTGACGGCCACCGTCTTCCTGAAGTCCGGCGTGCACTTGAACGTGGAGCCCGGGGCCACCATCCTGGGCGGCACGAGGCTAGAGGACTACCCCGAGGACTCGTGGCGGTGGTACGTGGTGGTGGCGGAGAACGCGACGGACGTGGGAATCGGCGGCGGCGGAGTGGTGGACGGGCAGGCTGCGGAGTTCGTGGTGAGGGAAGATCCGAGGAAGAATATTATGGTTAGTTGGAACCAAACGGGGGCTTGCTTAGGAGACGAATGCAGACCTAGACTCGTCGGTTTTCTTGGTTGCAGCAATGTTAGTGTCTCTAACATTACTCTCAATCACCCTGCTTATTGGTGCTTACACTTGGTGCGGAGTAACAACATATCCATTCACGATATTGCAATTTATGGGGACTTTAATATACCGAACAATGATGGGATTGATATTGAGGACTCAAACAACACGGTAATCACTCGATGCCACATTGATACAGGGGATGATGCAATCTGTCCAAAGTCATCCACAGGCCCTGTTTACAACCTTACGGTCACTAATAGTTGGATTCGATCCAAATCTTCTGCAATTAAGCTCGGGAGTGCTAGTTGGTTTGATATGAAGTATTTTGTGTTTGACAATATCACTATTGTGGATTCTCATAGAGGGATTGGATTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTATTCTCTAACATAAATATCAGCACAAGATACTATGACCCATTATGGTGGGGGAGAGCGGAACCTATCTATGTCACAACTTGCCCACGAGACTCAACTTCAAAGGAAGCATCAATATCAAACGTTCTTTTTATTAACATTACAGCAAATTCTGAAAATGGTATCTTCTTGTCTGGTTCAAAGGGAGGATTGTTAAGAAATTTGAGATTCATCAACATGGACATCACTTACAGAAGGTTCACCAGTTATGTTGGTGGGTTATTGGACTATAGGCCAGGATGCCAAGAGTTGGTTAAACACAGGACTGCGGGCATGATGATGGAGCACATTGAAGGTCTTGAGGTTAAGAATGTTGACATGAGATGGTCAAACAATGAACTAGAGCACTGGAATAATCCTTTAGAGTTCAGGCCATCTACTGTGAATAACATCTCTTTCCATAATTTTAATAGCAAATCAAATTATTAA 1380 0.4783 MDNPILFLLLFLLTPSHLATSDPLNPLTITLSVADYGATGDGLRYDTDAIQSAINSCPEGGPCRVTFPAPGKYLTATVFLKSGVHLNVEPGATILGGTRLEDYPEDSWRWYVVVAENATDVGIGGGGVVDGQAAEFVVREDPRKNIMVSWNQTGACLGDECRPRLVGFLGCSNVSVSNITLNHPAYWCLHLVRSNNISIHDIAIYGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTNSWIRSKSSAIKLGSASWFDMKYFVFDNITIVDSHRGIGFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRDSTSKEASISNVLFINITANSENGIFLSGSKGGLLRNLRFINMDITYRRFTSYVGGLLDYRPGCQELVKHRTAGMMMEHIEGLEVKNVDMRWSNNELEHWNNPLEFRPSTVNNISFHNFNSKSNY 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01996 459 SMART pbh1 301 323 IPR006626 -
Cca03g01996 459 SMART pbh1 338 363 IPR006626 -
Cca03g01996 459 SMART pbh1 221 242 IPR006626 -
Cca03g01996 459 SMART pbh1 194 220 IPR006626 -
Cca03g01996 459 SMART pbh1 247 268 IPR006626 -
Cca03g01996 459 SMART pbh1 171 193 IPR006626 -
Cca03g01996 459 Gene3D - 20 389 IPR012334 -
Cca03g01996 459 SUPERFAMILY Pectin lyase-like 5 389 IPR011050 -
Cca03g01996 459 Pfam Glycosyl hydrolases family 28 57 381 IPR000743 GO:0004650|GO:0005975
Cca03g01996 459 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 24 457 - -
Cca03g01996 459 PANTHER PECTIN LYASE-RELATED 24 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01996 Cca-Chr3 40056806 40060120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01996 28 455 Glycoside Hydrolase AT3G57790 68.037 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01996 - - gmx:100794954 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01996 03 40056806 40060120 Cca03g01996 03 40056806 40060120 ECH