Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01980 ATGAAGAGAGGCGCCAATAATAACAAAGCATCACCTCTTTCTTCGCAGCAATTCATCTCTGTTACCACCCCTCTTCTTGATCTGGAAAAGGAAGCTGAGGCATCAAGCACAAGTGTGTCTCAAGAGAGGGTCATAGAGGATGCTGAGCAAGATGATTTCGAAGTTGATGACTGTCCCATAGAGCAAGTGAGGCTAACGGTTCCAATCACTGATGACCCTACTCAGCCTGCACTAACATTCCGGACATGGGTTCTGGGGTTGGCATCATGTGTGCTCCTTGCCTTTGTGAACCAATTTTTGGGCTACAGAACCAACCCTTTGAAAATATCTTCAGTTTCAGCACAGATCATTACCCTCCCACTTGGGAAACTCATGGCTGCTACTCTCCCCACTAGACCGATCCAAGTCCCGTTCACCAAATGGTCTTTTTCGATGAATCCGGGGCCATTCTCTTTGAAGGAACATGTGCTGATCACCATCTTTGCTACCTCTGGATCTAGTGGTGTTTATGCAATTAGCATCATCACAATTGTTAAGGCTTTCTATCATAGGAACATTCATCCAGTAGCGGCTTATTTGCTAGCACTTTCAACCCAAATGCTTGGGTATGGATGGGCTGGGATTTTTAGAAAATTCCTTGTTGACTCCCCTTATATGTGGTGGCCTGAAACCCTTGTGCAGGTGTCTCTATTCAGGGCATTTCATGAAAAAGAAAAAAGGCCTAAAGGAGGAAAAACTAGGCTGCAATTCTTTTTCCTAGTCTTTGTAGTGAGCTTTGCCTATTACACCGTTCCAGGGTACTTTTTCCAAGCAATATCTACTATCTCCTTTGTTTGCCTCATTTGGAAAAGTTCCATCACAGCTCAACAGATTGGTTCAGGCATGGAAGGCCTCGGCCTTGGCTCATTTGGCCTTGATTGGAACACTGTTGCAGGCTTCTTTGGCAGTCCTTTGGCTATACCTGGCTTTGCCATCATCAACATGTTGATTGGATTTGTGTTGGAAGTCTATGTCGTGATTCCCCTTGCCTATTGGAACAACTTATATGATGCCAAAAAGTTTCCTCTCATTAGTTCTCACACTTTTGACTCTACTGGTGCACCATATAATGTTACTCGGATTCTAAATCCCAAAACTTTTGAAATTGATCTGAATAGTTATAACAACTACAGCAAGATCTATCTTAGTGTCACGTTTGCATTCGAGTATGGACTCTGCTTTGCAACTCTGACTGCCACTATCTCACATGTTGTCCTCTTCCACGGAGAAATGATTCTTCAAATGTGGAGGAAGACAACAAGTGCACTAAAAGAACAACTAGGAGATGTCCATACAAGAATTATGAAGAAAAACTATGAACAAGTCCCTGAATGGTGGTTTGTGACCGTTTTGATTCTCATGGTTGTTATGGCCTTGGTTGCTTGTGAAGGCTTTGGCAAGCAACTCCAACTGCCATGGTGGGGAATTTTACTCTCTCTAGTAATTGCACTAGTCTTCACCTTGCCAGTTGGGGTGATTCAAGCTACAACAAACATACAAACAGGACTCAATGTGATTGCAGAGTTGATAATTGGATTCATTTACCCAGGAAAGCCCCTAGCAAATGTAGCCTTCAAGACTTATGGTCATGTCAGCATGGTCCAGGCACTTGGGTTTCTTGGTGACTTCAAATTAGGCCACTATATGAAAATTCCTCCTAAATCTATGTTCATAGTGCAGCTAGTAGGCACAGTTGTTGCTTCATCTGTCCACTTTGCCACAGCTTGGTGGCTTCTCACATCTATTGAGAACATTTGTGATGAAGCATTGTTGCCAAAGGGTAGTCCCTGGACATGCCCTGGTGATGATGTGTTCTATAATGCTTCAATCGTATGGGGAGTAGTAGGACCAAAGAGAATGTTCACCAAGGATGGTGTTTACCCTGCTATGAATTGGTTTTTCCTGATTGGTCTACTTGCACCTCTTCCAGTGTGGCTGCTTTCTCGTAAATTCCCCAACCACAAGTGGATTCAACTCATCAACATTCCCATTATCACTGAAGGTGCATCCAACATCCCACCAGCCAGATCTGTGAATTATATTACATGGGGAACTGTTGGAATCTTCTTCAATTTCTATGTTTATAGAAAGTTCAAGGCATGGTGGGCTAGACATACTTACATTCTTTCAGCTGCATTAGATGCTGGAGTTGCTTTCATGGGTGTTGCCCTCTATTTTGCCCTCCAATCTAATGGTATTTTTGGTCCAGCCTGGTGGGGTCTTGATGCAGACCACTGCCCTTTGGCCAAATGCCCCACAGCTTCAGGTGTATATGCCAAGGGATGCCCTCTTCTCTGA 2337 0.4373 MKRGANNNKASPLSSQQFISVTTPLLDLEKEAEASSTSVSQERVIEDAEQDDFEVDDCPIEQVRLTVPITDDPTQPALTFRTWVLGLASCVLLAFVNQFLGYRTNPLKISSVSAQIITLPLGKLMAATLPTRPIQVPFTKWSFSMNPGPFSLKEHVLITIFATSGSSGVYAISIITIVKAFYHRNIHPVAAYLLALSTQMLGYGWAGIFRKFLVDSPYMWWPETLVQVSLFRAFHEKEKRPKGGKTRLQFFFLVFVVSFAYYTVPGYFFQAISTISFVCLIWKSSITAQQIGSGMEGLGLGSFGLDWNTVAGFFGSPLAIPGFAIINMLIGFVLEVYVVIPLAYWNNLYDAKKFPLISSHTFDSTGAPYNVTRILNPKTFEIDLNSYNNYSKIYLSVTFAFEYGLCFATLTATISHVVLFHGEMILQMWRKTTSALKEQLGDVHTRIMKKNYEQVPEWWFVTVLILMVVMALVACEGFGKQLQLPWWGILLSLVIALVFTLPVGVIQATTNIQTGLNVIAELIIGFIYPGKPLANVAFKTYGHVSMVQALGFLGDFKLGHYMKIPPKSMFIVQLVGTVVASSVHFATAWWLLTSIENICDEALLPKGSPWTCPGDDVFYNASIVWGVVGPKRMFTKDGVYPAMNWFFLIGLLAPLPVWLLSRKFPNHKWIQLINIPIITEGASNIPPARSVNYITWGTVGIFFNFYVYRKFKAWWARHTYILSAALDAGVAFMGVALYFALQSNGIFGPAWWGLDADHCPLAKCPTASGVYAKGCPLL 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01980 778 Pfam OPT oligopeptide transporter protein 78 740 IPR004813 GO:0035673
Cca03g01980 778 TIGRFAM ISP4_OPT: small oligopeptide transporter, OPT family 56 743 IPR004648 GO:0055085
Cca03g01980 778 PANTHER ISP4 LIKE PROTEIN 10 777 IPR004648 GO:0055085
Cca03g01980 778 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 62 742 IPR004813 GO:0035673
Cca03g01980 778 PANTHER OLIGOPEPTIDE TRANSPORTER OPT FAMILY PROTEIN 10 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01980 Cca-Chr3 39801356 39804667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01980 42 778 Organic Solute Cotransporters AT4G26590 66.802 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01980 - - gmx:100820498 1481.08