Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01977 ATGGTGGAACTAGAGAGCGACTACAGAGAGATTTGCAAGGTGGTACTGTGCTTAACCCAATCACGGTCCCTTGCGAAGGGTGTCCAACTCCATGGCCACGTCATCAAATCAGGGTTGGAAAGCGTTCCACTGGTGTGCCACCACCTGATCAACTTCTACTCCAAGTGCAACCTCCAACACTCTTCCCACAAACTCTTCGAAGATTTCCCTCACAAATCCGCGACCACGTGGAGCTCCCTCATCTCCTCCTTCGCGCAGAACGACCTCCCCCTCCCCGCCCTCCGCTTCTTCCGCCGCATGCTCCGCCACGCCCTCCGCCCCGACGACCATACGCTCCCCACCGCCGCGAAGTCCGTCGCCGCCCTCTCCTCCCTCCCCCTGGCCCACTCCCTCCACGGCCTCGCGCTCAAAACCGCCCACCGCCCCGACGTCTTCGTCGGAAGCTCCCTGGTCGACATGTACGCCAAATGCGGCGACATAAACTCGGCGCGCAAGGTGTTCGACGAAATGCCTCACAGAAACGTCGTCTCCTGGAGCGGCATGATATACGGGTACTCCCAAATGGGGCTCCACGAGGAGGCCCTCACCCTCTTCAAGCACGCTTTGAATGAAAACGTGGGTGTTAATGATTTCACGTTGTCTAGTGTGTTGAGGGTTTGTAGTGCCTCCACGTTGTTCGAGTTGGGGAAGCAAGTGCATGGATTGAGCTTTAAGACGAGTTTTGACTCGTCCTGCTTTGTGGCTAGTTCGTTAATCTCGTTGTACTCTAAGTGCGGCGTTGTGGAAGGGGGGTACCGTGTTTTTGAGGAGGTTCGTGTTAGGAACCTCGGCATGTGGAACGCGATGTTGATCGCGTGTGCTCAGCACGCGCACACGTGGAGAACGTTTGAGCTTTTTGAAGAAATGAGCGTTGGGGGGAATGTGAAACCTAATTTCATCACGTTTTTGTGTCTGCTTTATGCATGCAGCCATGCAGGGTTGGTGGAGAGGGGGTGGCGTTATTTCGCGTTGATGCAGGAGCTTGGTATTGAACCTGGTTCGCAGCATTATGCTACGTTGGTGGATTTGCTTGGTCGTGCTGGGAAGTTGGAGGAAGCGGTAAAGGTGGTTGAGGAAATGCCTGTGGAGCCCACGGAATCTGTTTGGGGGGCTTTGTTGACGGGGTGTAGGATTCATGGGAACGCTGAATTGGCGTCGTTTGTGGCTGACAAGGTTTCTGAGATGGGTGCTGTGAGTTCTGGGATTCAGGTTTTGCTCTCGAATGCTTATGCTGCTGCGGGGAgatgggaggaagcggcgagagcgaggaagaggatgagggatgaggggataaagaaggaaACTGGGCTGAGTTGGGTGGAGGAAGGGAATAGGGTTCATACGTTTGCTGCTGGAGATAGGTCTCATGGGAAGACTTTGGAGATTTATGAGAAGTTGGAGGAGTTGGGTGAGGAAATGGCGAAAGCTGGGTATGTTGCAGATACATCTTTTGTGTTGAAAGAAGTGGATGGGGATGAGAAGAGTATGAGTATAAGGTATCATAGCGAAAGGTTAGCCATTGCGTTTGGCCTTATTACTTTCCCTCCGGAAAGGCCCATCAGAGTAATGAAGAACTTGAGGGTTTGTGGTGATTGCCACACTGCCATCAAGTTTATTAGCAAGTGTACCGGAAGGGTGATCATTGTGAGGGACAATAATCGGTTCCACCGATTTGAAGATGGGAAATGCACTTGTGGGGATTATTGGTGA 1749 0.5106 MVELESDYREICKVVLCLTQSRSLAKGVQLHGHVIKSGLESVPLVCHHLINFYSKCNLQHSSHKLFEDFPHKSATTWSSLISSFAQNDLPLPALRFFRRMLRHALRPDDHTLPTAAKSVAALSSLPLAHSLHGLALKTAHRPDVFVGSSLVDMYAKCGDINSARKVFDEMPHRNVVSWSGMIYGYSQMGLHEEALTLFKHALNENVGVNDFTLSSVLRVCSASTLFELGKQVHGLSFKTSFDSSCFVASSLISLYSKCGVVEGGYRVFEEVRVRNLGMWNAMLIACAQHAHTWRTFELFEEMSVGGNVKPNFITFLCLLYACSHAGLVERGWRYFALMQELGIEPGSQHYATLVDLLGRAGKLEEAVKVVEEMPVEPTESVWGALLTGCRIHGNAELASFVADKVSEMGAVSSGIQVLLSNAYAAAGRWEEAARARKRMRDEGIKKETGLSWVEEGNRVHTFAAGDRSHGKTLEIYEKLEELGEEMAKAGYVADTSFVLKEVDGDEKSMSIRYHSERLAIAFGLITFPPERPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01977 582 Gene3D Tetratricopeptide repeat domain 120 233 IPR011990 GO:0005515
Cca03g01977 582 Pfam PPR repeat 278 303 IPR002885 -
Cca03g01977 582 Pfam PPR repeat 176 200 IPR002885 -
Cca03g01977 582 Pfam PPR repeat 76 102 IPR002885 -
Cca03g01977 582 Pfam PPR repeat 148 174 IPR002885 -
Cca03g01977 582 Pfam PPR repeat 249 275 IPR002885 -
Cca03g01977 582 Pfam PPR repeat 342 373 IPR002885 -
Cca03g01977 582 Gene3D Tetratricopeptide repeat domain 10 119 IPR011990 GO:0005515
Cca03g01977 582 Gene3D Tetratricopeptide repeat domain 243 481 IPR011990 GO:0005515
Cca03g01977 582 PANTHER OS01G0913400 PROTEIN-RELATED 7 526 - -
Cca03g01977 582 Pfam E motif 392 454 IPR046848 -
Cca03g01977 582 Pfam E+ motif 459 486 IPR046849 -
Cca03g01977 582 Pfam DYW family of nucleic acid deaminases 490 582 IPR032867 GO:0008270
Cca03g01977 582 TIGRFAM PPR: pentatricopeptide repeat domain 149 175 IPR002885 -
Cca03g01977 582 TIGRFAM PPR: pentatricopeptide repeat domain 176 206 IPR002885 -
Cca03g01977 582 TIGRFAM PPR: pentatricopeptide repeat domain 350 373 IPR002885 -
Cca03g01977 582 TIGRFAM PPR: pentatricopeptide repeat domain 313 346 IPR002885 -
Cca03g01977 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Cca03g01977 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Cca03g01977 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Cca03g01977 582 PANTHER BNAA10G28390D PROTEIN 7 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01977 Cca-Chr3 39760240 39761988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01977 4 582 Glycoside Hydrolase AT3G49170 35.993 2.36e-129 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01977 - - gmx:100800235 978.008