Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01964 ATGCCTGCGGTGTCTGCTGTTATTTCCCGCCAAGTTGTGCCTGCTTGTGGCAATCTTTGTTTCTTATGCCCTTCCATCAGGACAAGGTCAAGACAACCTGTCAAGAGGTATAAGAAGCTCATCTCTGACAATTTCCCACGTAACCAGGAGGAAGGGCCGAATGATAGGAAAATAGGAAAATTATGTGATTATGCTGCCAGAAATCCTTTACGTATCCCAAGGATTGTGCAAGCCCTTGAGCAAAGGTGTTACAAGGAGCTACGAAATGAGAATTTCCATTCAACCAAAATCGTCATGTGCATTTACAAGAAACTTCTGTCTTCTTGTAATGAACAAATGCCACTATTTGCGAGTAGCTTGCTAAGTATTATTCACACGCTGCTGGATCAATCACGGCAGGATGAAATGAGAATTATAGGATGTCAAATTCTGTTTGATTTTGTAAATAATCAGACTGATGGAAGTTACCTGTTCAACTTAGAATCTGTTATCCCGAAGATCTGTCAATTAGCTCAAGAAACTGGAGATGATGAAAGGGCAAGAACTAGCCGTTCAACTGGTTTGAAAGCCCTTTCAGCAATGGTTCTGTTTATGGGCGAACACTctcacatatcagttgaatttgataatATTGTTTCTGCTGTCTTGGAAAACTATGAAGTTCCTAAGAAAAATTCAGCAAACCCTGATCAAGAGGAAAAAGGTGCTGAGAATATGTGGGACCAAGACTTGATGGCCAATGGGGGTCAAATCTCTCCTTTGCTGGATGTTAAAAGGAGAAACCCTTCCTGGAAGAGAACTGTTAATGATAAAGGCGAAATAATTGTAGCAATGGAAGATGACATGAATCCCTCTTTTTGGTCTGGGGTTTGCCTTCATAATATGGCCAACTTAGCCAAGGAGGGGACTACCATACGTCGTGTAATGGAATCTTTATTCCGGTATTTTGATAATGGAAACTTATGGTCTATAGACCATGGCCTCGCCTTTTCCGTTTTAAAGGATATGCTATTTTTGATGGATGATTCTGAGAAAAACACACATGTTTTGCTGTCAATGTTAATCAAGCATCTGGATCATAAAATTGTCCTTAAAGAACCTCACATGCAGCTTGACATTGTTGAGGTTACCACTTCACTTATCCAATATGCAAAGGTCCAACCTTCTATATCAATAGTTGGTGCAGTAAGTGACATGATGAGACATTTGCGGAAGTGCATACTTTGTTCCCTAGATGACTCAAATCTGGCCCCTGATGTAATCAATTGGAACAAGAATTACAAAAAAGTTGTGGATAAGTGCCTTGTACAGTTATCAAATAAGGTTGGAGAAGCCGGTCCAATTCTTGATGTTATGGCCGTGATGTTGGAGAACATCTCAACTATCACATCAACATCTAGAACCACAGTCTATGCTGTCCATCGGAGTGCTCAAATTGTAGCCTCCTTAACAAATGTGTCCTATCAGAAAAAGGCATTCCCTGAGACCTTGTTTCATCAACTTCTCCTGGCTATGGTCCATCCAGATCATGAAACACGAGTGGTAGCTCACCGCATCTTTTCTGTCATTCTTCTACCATCCTCTGTTTTCCATGGTTCAAGATTGTCTGTTTCTGATCCCAAGGCATCGAGTGTTCCTCGAACTCTCTCAAGAGCAGTCTCTATTTTCTCTTCTTCAGCTGTCTTATTTGAGAAGCTAAGACTGGAGAAACGTTCTTCAAGTGAAAGATATAGTCAATATAACGGGGGAAATATTTCTGGAGAGATTGAACCAGTTAATAGCAATGTTGGGATCGTAAGCAAATTAAAGCCAACTTATAGTCGGGTGTCTAGCGTGAATAACCCTCCTCTACAATTAGAAGTGAAGGAAATTGCTGCAAACAAAGTTAATCAGAACTCGGGGGTTGCTCTCAGGCTAAGTAAGCTTCAGATAAATCGATTGTTATCGTCAATTTGGGCACAGTCTATGTCTCCAGGAAATATGCCTGCAAATTATGAAGCAATTGCTTATTCATACACTTTGATATTACTTGTTTCTAGAGCAAAGAATTCTTTTCATGAGGTACTAGTTCGGAGTTTTCAGCTGGCTTTTTCTTTATGGAATATTTCTCTTAAGGAAGGGCCATTGCCTCCATCTCGTCGGAGATCACTCTTTACTCTGGCAACTTCAATGATTTTGTTTGCTTCAAAAGAATACAACTTTGACAGTCTTGTCCAGAGTGCCAAGGAAGTGCTTACAGAGAGAAAGGTTGATCCCTACCTTCAGTTAATTGAAGATTACAAGTTGCAAGCTGTCAGCTTTGCACCTGATAATCTAACCATCAACTATGGTTCCAAAGAAGATGATGAGAGGGCCTTAGACACTCTTACAGACTTGTTGAGTTATATACACAAAACACGGGAACTATTTGCTTCTGAAATCATTAAGAGCTTGGAAATGTTTGCAAAAGCTGAATTATCATCAATAAGGGAACAGTTGCTAGAAGAATTTGCACCAGATGCTATGTGTGAACTTGGATCTCAATTGACTGTGAACATGGCCGCAAAGGATGCTTCAATAAGTATTGATGATGACTTTATTTTTGAACCATTTGAAAGTCAAGTAATACATAATCGGGGTTTGTCCACAGAGGTCCCAAGCCTTCTGGGTGCTAATCAACTTTTAGAATTAATTTTGGATACATCTCATCCATCTGGGAGGATTTCTGTATCAAATGCATTTAATATGCCATACAAGGATATGGCCGACAAGTGTGAGGTTCTTTTGATGGAAAAGCAGAAGATGTCCAGATTGATGAGTACCCAACAGAAGCACGAATATTTAGTGGACTCCCCTTTACCTAATCATGGCAATGAATTGAAAAAAATAGATTCCACTTCCCATGTGGATTTTCCCAAGGTGGGAAACTCACCCTTTGAAGAGAATACTTCTGTGGGTTTCTACAAACCAACTTCTGGCCCTCTTCCAATGCTGTGTGCAACTGAATATCAGAATCAGACTCACCCTTTCAAACTGCCAGCATCTAGCCCCTACGATAACTTTCTGAAAGCTGCTGGTTGCTGA 3063 0.4006 MPAVSAVISRQVVPACGNLCFLCPSIRTRSRQPVKRYKKLISDNFPRNQEEGPNDRKIGKLCDYAARNPLRIPRIVQALEQRCYKELRNENFHSTKIVMCIYKKLLSSCNEQMPLFASSLLSIIHTLLDQSRQDEMRIIGCQILFDFVNNQTDGSYLFNLESVIPKICQLAQETGDDERARTSRSTGLKALSAMVLFMGEHSHISVEFDNIVSAVLENYEVPKKNSANPDQEEKGAENMWDQDLMANGGQISPLLDVKRRNPSWKRTVNDKGEIIVAMEDDMNPSFWSGVCLHNMANLAKEGTTIRRVMESLFRYFDNGNLWSIDHGLAFSVLKDMLFLMDDSEKNTHVLLSMLIKHLDHKIVLKEPHMQLDIVEVTTSLIQYAKVQPSISIVGAVSDMMRHLRKCILCSLDDSNLAPDVINWNKNYKKVVDKCLVQLSNKVGEAGPILDVMAVMLENISTITSTSRTTVYAVHRSAQIVASLTNVSYQKKAFPETLFHQLLLAMVHPDHETRVVAHRIFSVILLPSSVFHGSRLSVSDPKASSVPRTLSRAVSIFSSSAVLFEKLRLEKRSSSERYSQYNGGNISGEIEPVNSNVGIVSKLKPTYSRVSSVNNPPLQLEVKEIAANKVNQNSGVALRLSKLQINRLLSSIWAQSMSPGNMPANYEAIAYSYTLILLVSRAKNSFHEVLVRSFQLAFSLWNISLKEGPLPPSRRRSLFTLATSMILFASKEYNFDSLVQSAKEVLTERKVDPYLQLIEDYKLQAVSFAPDNLTINYGSKEDDERALDTLTDLLSYIHKTRELFASEIIKSLEMFAKAELSSIREQLLEEFAPDAMCELGSQLTVNMAAKDASISIDDDFIFEPFESQVIHNRGLSTEVPSLLGANQLLELILDTSHPSGRISVSNAFNMPYKDMADKCEVLLMEKQKMSRLMSTQQKHEYLVDSPLPNHGNELKKIDSTSHVDFPKVGNSPFEENTSVGFYKPTSGPLPMLCATEYQNQTHPFKLPASSPYDNFLKAAGC 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01964 1020 PANTHER CYCLIN-LIKE PROTEIN 6 1020 - -
Cca03g01964 1020 PANTHER PUTATIVE, EXPRESSED-RELATED 6 1020 - -
Cca03g01964 1020 SUPERFAMILY ARM repeat 73 525 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01964 Cca-Chr3 39566949 39581937 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01964 K21842 - gmx:100817296 1692.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01964 03 39566949 39581937 Cca03g01964 03 39566949 39581937 ECH