Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01946 ATGACATGCTGCGTGCAGCTGTGTGTACTTTGTATTTTTCTTCCCTACTCATATTTTATTCCGCCAAGTCGGTCAACTTATAACAACTTGATAAATGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTCAATGTTTGCAAGAAAATGACAGACAATGGTGTTGGGCCTGATCTTGTTACTCACAATATTATACTATCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTCTGTCTTATTTTGAACTAATGAAGGGAACTCATATCCGTCCTGACACAACTACACTTAATATTGTTATTCATTGTCTAGTAAAGCTTCGACAATATGACAAAGCTATTGATATTTTTAATTCCATGAGGGAGAAGAAGTCAGAATGCACCCCTGATGTCGTTACATTCACTAGTATCATTCACTTGTATTCTGTGTGTGGACAAGTTGAAAGCTGTGAGGCTGCATTCAATATGATTCTTGGAGAAGGGCTGAAACCAAATATAGTCTCCTATAATGCACTAATAGGTGCATATGCTGCTCATGGGATGGACAATGAAGCACTTTTGGTTTTCAATGAAATAAAGCAAAATGGTATCCGCCCTGATATTGTGTCTTATACTTCTCTCCTTAATGCTTATGGAAGATCACAAAAGCCCCAGAAGGCAAGGAAAATATTTGATATGATAAAGAAAAACAAGTTGAAGCCAAACATTGTCAGTTACAATGCACTGATTGATGCTTATGGATCTAATGGTTTGCTGGCAGATGCAATTGAAATCTTGCGAGAAATGGAACAAGATGGAATTCAGCCAAATGTTGTCTCAATATGCACCCTCTTGGCTGCCTGTGGACGATGCAGTCGGAAGGTGAAGATTGACACAGTGCTAACAGCAGCTGAGATGCGGGGAATTAAATTGAACACAGTTGCATATAATTCAGCTATAGGAAGCTGTATGAATGTAGGGGAATATGACAAAGCTATAAGCTTGTATAAATCTATGAGGAAGAAAAAAGTTAAAACTGATTCTGTTACTTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTTTGTCCAAAGAGGTCTACTCATCTGTCATATGTGCCTATAGCAAACTGGGCCAAATTGTAGAAGCAGAGTCTACATTCAACCTGATGAAATCATCTGGTTGCTACCCTGATGTGGTTACATACACTGCCATGCTTGATGCTTACAATACAGCTGAGAATTGGGAGAAAGCTTATGCACTCTTTGAAGAAATGGAAGCAAGTGGCATCAAGCTAGATACTGTTGCTTGTGCAGCTCTAATGAGATCTTTTAATAGAGGTGGCCAACCAAGAAGGGTTCTTGGTCTTGCTGAGAGTATGAAAGAAAAAGAAATTCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGATATGATCAATTACATAGAGCCCTCACTTCCTGTAATATCATCCGGATGTTTGAATCAGTTCCTGCATTCTTTAGGAAGAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCATCAGGTGCTGATGTTAACTTAAGCACTTACTCTATTTTATTGAAGAATCTTTTATCATCCGGAAATTGGAGGAAATATTTAGAGGTATTACAATGGATGGAGGATGCAGGAATTCATCCATCAACTGAAATGTACCATGATATATCCTCCTTTTCGCAAAAATGCTGTGGGGATGAAAATGCTGCTGTCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATTCGGGGATCAAATTTCTACAGGCCAACCTTGTGAATCTCCTGTTCTTAGTTGA 1908 0.3805 MTCCVQLCVLCIFLPYSYFIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIDIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVESCEAAFNMILGEGLKPNIVSYNALIGAYAAHGMDNEALLVFNEIKQNGIRPDIVSYTSLLNAYGRSQKPQKARKIFDMIKKNKLKPNIVSYNALIDAYGSNGLLADAIEILREMEQDGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNSAIGSCMNVGEYDKAISLYKSMRKKKVKTDSVTYTVLISGCCKMSKYGEALSFMEEMMHLKLPLSKEVYSSVICAYSKLGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNTAENWEKAYALFEEMEASGIKLDTVACAALMRSFNRGGQPRRVLGLAESMKEKEIPFSDTIFFEMVSACSILQDWRTAVDMINYIEPSLPVISSGCLNQFLHSLGRSGKIETMLKLFFKMLASGADVNLSTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSTEMYHDISSFSQKCCGDENAAVIKERLESLKRKFGDQISTGQPCESPVLS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 23 57 IPR002885 -
Cca03g01946 635 SUPERFAMILY TPR-like 92 435 IPR011990 GO:0005515
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Cca03g01946 635 SUPERFAMILY TPR-like 23 157 IPR011990 GO:0005515
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Cca03g01946 635 PANTHER OS07G0213300 PROTEIN 19 593 - -
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Cca03g01946 635 Gene3D Tetratricopeptide repeat domain 296 400 IPR011990 GO:0005515
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Cca03g01946 635 Pfam Pentatricopeptide repeat domain 433 477 IPR002885 -
Cca03g01946 635 Pfam Pentatricopeptide repeat domain 253 282 IPR002885 -
Cca03g01946 635 Pfam Pentatricopeptide repeat domain 538 589 IPR002885 -
Cca03g01946 635 Pfam Pentatricopeptide repeat domain 188 249 IPR002885 -
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 58 92 IPR002885 -
Cca03g01946 635 Pfam PPR repeat family 24 69 IPR002885 -
Cca03g01946 635 Pfam PPR repeat family 305 353 IPR002885 -
Cca03g01946 635 Pfam PPR repeat family 378 421 IPR002885 -
Cca03g01946 635 Pfam PPR repeat family 92 139 IPR002885 -
Cca03g01946 635 Gene3D Tetratricopeptide repeat domain 225 295 IPR011990 GO:0005515
Cca03g01946 635 Gene3D Tetratricopeptide repeat domain 401 479 IPR011990 GO:0005515
Cca03g01946 635 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 19 593 - -
Cca03g01946 635 Gene3D Tetratricopeptide repeat domain 108 211 IPR011990 GO:0005515
Cca03g01946 635 Gene3D Tetratricopeptide repeat domain 482 610 IPR011990 GO:0005515
Cca03g01946 635 Gene3D Tetratricopeptide repeat domain 13 107 IPR011990 GO:0005515
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 412 446 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 378 411 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 202 236 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 26 58 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 96 127 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 167 201 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 520 546 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 237 271 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 132 166 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 553 585 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 342 372 IPR002885 -
Cca03g01946 635 TIGRFAM PPR: pentatricopeptide repeat domain 60 94 IPR002885 -
Cca03g01946 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01946 38 598 Glycosyltransferase AT1G05670 23.843 5.72e-39 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01946 - - gmx:100814643 1158.67