Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01936 ATGACAGCACACACCTACCTAGTGAATCACCTACCTGCCCTATGGCTTTCAGTTCCAGCTACGAAACACCCCATCCCATGTCCTCCACCTACAAAACACCCCACGACAACAACACGACGACGTTTCACAGTCCCTCCAGCAGCCAGCAAGTGGTGGCGGTGGTGGTCCCCTTCCCCGCCCAGGGccacctcaaccagctcctccacctctcccgcctcctcctctcccgcaacatccccgtccacttcGTGGGCTCCGCCTGACTCCTTGATGGCCTCCGTCGTCCAAGACGTCATCCACCTCCCCAACTGCGAAACCTACACCTTCCACAGTGTCTCCGCCTTCACCATGTTCTTCTACTTCTGGGACACTATGGGACGACCCCAGGTTAAACAAAACGACACCAACACCATCATCCCTCAGGTTCCTTCTCTTGAAGGCTGCTTCACCACCGAGTTTATTCACTTTGTGTCCTCGCAGTACGAGTTCCACAAGCTTAGTAAGGGTACCATATACAACACTACTAGGGCGATTGAGAGGCCCTACATGGAGCTAATAGAGAGGATCATTACCACCAAGGCCCATTGGGCCTTGGGGCCCTTCAACCCTTTGTCAATGCAAAACACCGGAAGCCACCACCACCCCGCCATGGAGTGGCTTGACAAGCAAGAGGAAAGATCCGTCCTTTATGTTTCCTTTGGGACAACAACATGCTTTAGCGAGGAACAAATCAAAGAGGTTGCAAGTGGGTTGGAGAATAGTAAGGTGAAGTTTTTGTGGGTGGTGAGGGATGCTGACAAGGGTGATGTGTTTAACAACGATGAGGGTGGTGGAGTTGCTAAAATTCCTAAGGGGTTTGAAGAGAGAGTGAAGGGGGTGGGTTTAGTTGTGAGGGACTGGGCACCCCAATTGGAGATTTTGGCACACCCTTCAACCGGGGGTTTCATGAGTCACTGTGGGTGGAACTCTTGCATGGAGAGCATAAGCATGGGGGTGCCAATAGCAGCATGGCCTATGCACTCTGACCAACCCAGGAACAGGGTTTTGGTGACCGATGTGCTTAAGGTTGGGATTGTTGTGAAGGAGTGGGAACACAGAGATGAGTTGGTGACAATGCTTGAACTGGAGAATGCCGTGAGGAGGTTGATGACGACGGAGGAAGGTGATGAGATGAGAGAAAGAGCATTGAAGCTCAAAAACGCCATTCACGAGGCTGCAGATGAAGGAGGTGTTTCTCGCGTCGAGTTTGATGATTTCATTGCACACGTGACTAGATAG 1278 0.4898 MTAHTYLVNHLPALWLSVPATKHPIPCPPPTKHPTTTTRRRFTVPPAASKWWRWWSPSPPRATSTSSSTSPASSSPATSPSTSWAPPDSLMASVVQDVIHLPNCETYTFHSVSAFTMFFYFWDTMGRPQVKQNDTNTIIPQVPSLEGCFTTEFIHFVSSQYEFHKLSKGTIYNTTRAIERPYMELIERIITTKAHWALGPFNPLSMQNTGSHHHPAMEWLDKQEERSVLYVSFGTTTCFSEEQIKEVASGLENSKVKFLWVVRDADKGDVFNNDEGGGVAKIPKGFEERVKGVGLVVRDWAPQLEILAHPSTGGFMSHCGWNSCMESISMGVPIAAWPMHSDQPRNRVLVTDVLKVGIVVKEWEHRDELVTMLELENAVRRLMTTEEGDEMRERALKLKNAIHEAADEGGVSRVEFDDFIAHVTR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01936 425 MobiDBLite consensus disorder prediction 61 85 - -
Cca03g01936 425 Gene3D Glycogen Phosphorylase B; 93 412 - -
Cca03g01936 425 PANTHER GLYCOSYLTRANSFERASE 88 425 - -
Cca03g01936 425 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 216 386 IPR002213 GO:0008194
Cca03g01936 425 PANTHER GLYCOSYLTRANSFERASE 88 425 - -
Cca03g01936 425 Gene3D Glycogen Phosphorylase B; 214 407 - -
Cca03g01936 425 CDD GT1_Gtf-like 111 406 IPR002213 GO:0008194
Cca03g01936 425 ProSitePatterns UDP-glycosyltransferases signature. 300 343 IPR035595 -
Cca03g01936 425 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 88 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01936 Cca-Chr3 39160902 39162776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01936 108 424 Glycosyltransferase AT2G15490 32.653 4.65e-53 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01936 K13495 K13492 gmx:100799527 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01936 03 39160902 39162776 Cca03g01936 03 39160902 39162776 ECH