Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01928 ATGAGCACACATGGTTCTTACGGCATGAGATCCAAAGCATCCTTTGAAAGTGAAGCCAAGGCCACAGTGAAAGAAAGTGGGGGTGGGGGTGGAGGCAAGAGTGGAAAGACCATGTCCATCAACAGCAAGGAGAATCTGTTCATATGTTTTCTGGTGACACTTTGGTACTCATCAAACATTGGTGTGATTCTTCTGAACAAGTATCTGCTTTCAAACTATGGGTTCAAGTTCCCCATCTTCCTCACAATGTGCCACATGTCAGCCTGTGCTGTTCTCAGCTATGTGTCCATCGTGTTCTTCAAGGTGGTGCCTCAGCAGATGATAAAATCAAGGTCTCAGTTCATGAAGATTGCAACTTTGAGCCTTGTGTTCTGTGCCTCTGTGGTGGGTGGCAACGTCTCCCTCAGGTACCTAGCTGTGTCATTCAACCAAGCAGTTGGGGCAACCACTCCTTTCTTCACTGCTGTCTTTGCCTATTTGGCCACCCTTAAGAGAGAGGCTTGGGTTACCTATGCTGCCCTTGTTCCTGTTGTTGCTGGGGTTGTCATTGCAAGTGGGGGCGAGCCAGGGTTTCACTTATTTGGATTCATTATGTGCCTAAGTGCCACTGCCGCTAGAGCTTTCAAGTCTGTCCTTCAGAGCATTTTACTTTCTTCTGAAGGGGAGAAGTTGAATTCAATGAATTTGCTCCTGTATATGTCTCCAATCGCGGTCCTAGTTTTGTTGCCTGCAGCACTAATCATGGAGCCAAATGTCGTAGATGTCACATTGACGCTTGCAAAGGACAATAAATCCATGGGGCTACTTCTTTTGCTCAACTCAATTACAGCATATGCAGCAAACTTAACAAACTTCCTGGTGACTAAACATACTAGTGCTCTGACACTCCAGGTATTAGGCAATGCGAAAGGTGCGGTAGCTGTTGTAATCTCAATACTATTATTCAGAAATCCTGTCACTGTTGTTGGCATGGGTGGCTATACAATTACTGTAATGGGAGTTGCTGCATATGGAGAAACAAAAAGGAGGTTTAGATGA 1038 0.4547 MSTHGSYGMRSKASFESEAKATVKESGGGGGGKSGKTMSINSKENLFICFLVTLWYSSNIGVILLNKYLLSNYGFKFPIFLTMCHMSACAVLSYVSIVFFKVVPQQMIKSRSQFMKIATLSLVFCASVVGGNVSLRYLAVSFNQAVGATTPFFTAVFAYLATLKREAWVTYAALVPVVAGVVIASGGEPGFHLFGFIMCLSATAARAFKSVLQSILLSSEGEKLNSMNLLLYMSPIAVLVLLPAALIMEPNVVDVTLTLAKDNKSMGLLLLLNSITAYAANLTNFLVTKHTSALTLQVLGNAKGAVAVVISILLFRNPVTVVGMGGYTITVMGVAAYGETKRRFR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01928 345 Pfam Triose-phosphate Transporter family 48 337 IPR004853 -
Cca03g01928 345 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 336 - -
Cca03g01928 345 PANTHER NUCLEOTIDE-SUGAR TRANSPORTER FAMILY PROTEIN-RELATED 38 344 - -
Cca03g01928 345 PANTHER SOLUTE CARRIER FAMILY 35 38 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01928 Cca-Chr3 39051425 39056770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01928 43 345 Organic Solute Cotransporters AT5G04160 81.848 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01928 - - gmx:100782949 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01928 03 39051425 39056770 Cca03g01928 03 39051425 39056770 ECH