Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01921 ATGGTGTCAAAACCTGGTTTTTTCTATGAACATGGGAACTTTTCATCAATCAAAATCTTCATACTCTTAATCCTTAATTCTATACTTCACAAAGCCAACTCAGGCTGCAACAACTCTGCTTCCAATTCCTTAGTTCCATTTCCACCTCATGAGATCCTCTCATCACTCCAAGCACTGCCTCTAGATGGCCACTTTAGCCTAAGGGACAATGGTGATGCTGCCAAGGACTTTGGCAACATTCACCATTTTCCTCCTCTAGCAGTGCTGCATCCAAAGACAGTTTCTGATATTTCACACACCTTAAAGCATGTTTTTGAAATGGGGTTTGCCTCAGAGTTGAAGGTGGCTGCTAGAGGCCATGGCCATTCCCTTCAAGGCCAGGCTCAAGCACATGGAGGCCTTGTCATTAACATGGAGTCACTGCAGGGTCCTGAAATGAAAGTCCACAATGGAGAATTGCCTTATGTGGATGTCTCAGGGGGTGAGTTGTGGATAAACATTCTGCATGAAACTCTTAGACATGGCTTGGCACCAAAGTCATGGACAGATTACCTTCATCTCACTGTTGGAGGCACTCTTTCAAATGCTGGCATAAGTGGTCAAGCCTTCAAACATGGACCTCAGATTAATAACATCTTCCAGCTTGAAGTGATCACAGGAAAAGGAGAGGTGGTTACTTGCTCAGCAAACCGAAATGCTGATCTTTTTTATGGTGTTCTTGGAGGGCTTGGTCAATTTGGCATCATCACAAGGGCTAGAATTTCTCTTGAACCAGCACCCAAGATGGTGAAATGGATTAGGGTGCTCTACTCAGAATTCTCAACATTTACTAAGGATCAAGAGTATTTGATATCACTTAAAAACACATTTGATTATATTGAAGGGTTTGTAATTATAAACAGAACCGGCATCCTTAACAATTGGAGATCATCCTTTGATCCAAAAAACCCACTTCAAGCGAGCCAATTCATTTCTGATGGGAAAACCTTCTACTGTCTTGAGATGGCAAAATACTTCAACCCTGATGAAGCTGAAGTCATGAATCAGAGTGTTGATCACCTACTGTCAAAGCTGAGTTACATCCCTCCCACACTCTTCCTATCAGAAGTTTCTTACGAGGAATTCCTAGACAGAGTGCATGTTTCTGAGAAAAAGCTAAGAGCAAAAGGGTTGTGGGAAGTTCCCCATCCTTGGCTGAACCTTCTGATCCCAAGTAGTGAGATTCACCACTTCGCTGAACAAGTATTTGGCAATATTCTTAAGGACACAAGTAACGGTCCCATACTCATTTACCCCGTCAACCAAACAAGGTGGAACAGAAAAACATCTTTGGTTACCCCCGAGGAAGATGTTTTGTACCTTGTGGCATTCCTATCCTCTGCGGTCCCGAATTCAACAGGTGCAGATAGTTTAGAACACATTCTAGCCCAAAACAAAAGGATCATAGACTTCTGCAACCGTGCCCAACTGAGAGTGAAGCAGTACCTTCCCCATTACAGCACAGAGGAAGAATGGAAAGCCCACTTTGGGTCACAATGGGAGGCATTTGTAGAAAGAAAAAGGGCCTATGACCCACTAGCCCTGCTTGCCCCTGGCCACAAAATCTTTCAAAAGGCACTATCTGCTTCATGTTAG 1635 0.4355 MVSKPGFFYEHGNFSSIKIFILLILNSILHKANSGCNNSASNSLVPFPPHEILSSLQALPLDGHFSLRDNGDAAKDFGNIHHFPPLAVLHPKTVSDISHTLKHVFEMGFASELKVAARGHGHSLQGQAQAHGGLVINMESLQGPEMKVHNGELPYVDVSGGELWINILHETLRHGLAPKSWTDYLHLTVGGTLSNAGISGQAFKHGPQINNIFQLEVITGKGEVVTCSANRNADLFYGVLGGLGQFGIITRARISLEPAPKMVKWIRVLYSEFSTFTKDQEYLISLKNTFDYIEGFVIINRTGILNNWRSSFDPKNPLQASQFISDGKTFYCLEMAKYFNPDEAEVMNQSVDHLLSKLSYIPPTLFLSEVSYEEFLDRVHVSEKKLRAKGLWEVPHPWLNLLIPSSEIHHFAEQVFGNILKDTSNGPILIYPVNQTRWNRKTSLVTPEEDVLYLVAFLSSAVPNSTGADSLEHILAQNKRIIDFCNRAQLRVKQYLPHYSTEEEWKAHFGSQWEAFVERKRAYDPLALLAPGHKIFQKALSASC 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01921 544 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 85 120 IPR006093 GO:0016491
Cca03g01921 544 Gene3D - 71 536 IPR016167 -
Cca03g01921 544 SUPERFAMILY FAD-linked oxidases, C-terminal domain 260 536 IPR016164 GO:0003824|GO:0050660
Cca03g01921 544 SUPERFAMILY FAD-binding/transporter-associated domain-like 72 258 IPR036318 GO:0050660
Cca03g01921 544 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 9 541 - -
Cca03g01921 544 Gene3D - 262 495 IPR016170 -
Cca03g01921 544 Pfam FAD binding domain 85 228 IPR006094 GO:0050660
Cca03g01921 544 Gene3D - 138 261 IPR016169 -
Cca03g01921 544 PANTHER GULONOLACTONE OXIDASE 9 541 - -
Cca03g01921 544 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 260 536 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cca03g01921 544 ProSiteProfiles PCMH-type FAD-binding domain profile. 81 259 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01921 Cca-Chr3 38920572 38923750 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01921 K00279 - gmx:100777568 988.023