Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01919 ATGTTATCTCTGCAGAAGTTTTTTGGTGTACGCCGTGCTCGTGTGATATCTACAGGATCCTTGAAGCTCGACCTAGCTCTTGGAGTTGGAGGATTACCAAAGGGTAGAATTGTGGAAATTTATGGGCGAGAAGCAGCTGGTAAGACTACACTTGCACTTCAAATTATTAAAGAGGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCATTGGACTTCTCACTTGTGGAATCAATAGGCGTAAATACTGAAAACCTTCTTGTATCAAATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTGGATACATTAACAAAAAGTGGAGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTTGTCCCCAAATGCGAACTTGATCAATTAGGAGTTAGCACTAAGCGAGATTTACAATCACGAATGATGACTCAAGCTCTGCGGAAAATTCATTATTCATTATCTCACTCTCAAACTCTCATTGTTTTCATTAATCAGATTAGATTGAGTCCAAAATCAGATAAGGAATGTAGATCTGTGGAAGAAGTCACTTGTGGTGGAAATGCCTTGAGATTCTATGCAGCTGTTCGATTGAGACTTTCAAGAATGGGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTCATATCTGTGCGCAAGTGGTAAAAAACAAACTAGCACCAGCAGCAATGAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGAGGTCTTAGATTTGGCTTGTGAACATGGAGTCATTGTGCAAGATGAGGGAAGCTACTTCATTGAAGGGAATGTTTTTGATAGTAGGGAAGCAGCTGAACTGTTTTTGGCAAAAAATGATGCCATTTGTGACCAACTTTATGCAATTGAGCATTGGCAACACGTTATCAAAGGCATTGATATTGCCTTCAGTGGGTATCAACCATTTTTCAGATGA 972 0.3992 MLSLQKFFGVRRARVISTGSLKLDLALGVGGLPKGRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDFSLVESIGVNTENLLVSNPDCAENLLSMVDTLTKSGAVDVIVIDSVAALVPKCELDQLGVSTKRDLQSRMMTQALRKIHYSLSHSQTLIVFINQIRLSPKSDKECRSVEEVTCGGNALRFYAAVRLRLSRMGLIKTEDKVEGVHICAQVVKNKLAPAAMKRAELGIKFGRGFCHESEVLDLACEHGVIVQDEGSYFIEGNVFDSREAAELFLAKNDAICDQLYAIEHWQHVIKGIDIAFSGYQPFFR 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01919 323 ProSiteProfiles RecA family profile 2. 186 253 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Cca03g01919 323 Gene3D - 11 315 IPR027417 -
Cca03g01919 323 ProSiteProfiles RecA family profile 1. 12 171 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Cca03g01919 323 Pfam recA bacterial DNA recombination protein 13 248 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca03g01919 323 PANTHER RECA 1 299 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca03g01919 323 SMART AAA_5 34 208 IPR003593 -
Cca03g01919 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 235 IPR027417 -
Cca03g01919 323 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 1 299 - -
Cca03g01919 323 PRINTS RecA protein signature 104 133 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca03g01919 323 PRINTS RecA protein signature 142 171 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca03g01919 323 PRINTS RecA protein signature 277 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca03g01919 323 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca03g01919 323 PRINTS RecA protein signature 70 99 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca03g01919 323 PRINTS RecA protein signature 190 218 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca03g01919 323 ProSitePatterns recA signature. 193 201 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01919 Cca-Chr3 38859552 38863015 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01919 - - var:108318700 521.546