Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01916 atggcgccaaaacgaaaaccttcgtctccaatctccatcgGTAACTGCCAGATTACGGTCGAGGCCAACCGTTTCACCTGCAGCTCCGATGCAAACGGCGTCGTAATCTCTCTTACGCGAAGCGGAAGGATCAAAGTATCTGCAGTGGCTGCAGAACACGGGAACGCTTCTGAGGATTTTAGGTCCGAAGATAAAGGACACGAGTTTGTGCTAGTTAATCCTAAAGATGTTGATGGTATTAACAAATCTTACCTTCAGGAAGTATTTCAGTTGTATACGACAGAGCTACCTGGAATGAATTATGCTGCGAATACGGGAAAACAATCGAAGTTTCTCGAGAGATGTGTGAATAAGGGGAAATATCGAACACTAATTATGAAATCAACTTCTGTTGGAAATTCAGGAAAGGTTATAGCTGCAATTACATACCAAATCATCGCTGCAGATACAGAATATGCCGAGATCCCACTAGCAGCTGTCAATGCAATCTATCAACGGAAGGGTTTTGGTCATCTGTTGTTTATAGAGCTACGGAACAGACTTCAAAGTGTTGGCATTCGTTCTATTTTCTGCTGGGGTGACAAAGAATCGGAAGGATTTTGGCTTAAACAGGGTTTTACAGAAATAGCACAGGTGGATGCCAAAGGAAGGGCCCGCAGGCTACCCGTAAAAGCTGATATTAGAAAATCTTTATGCTTCCCTGGTGGTTCAACTCTCATGGTTTGCCATCTAAGGAAAGAATTCTTAGCTGATAATGCTAACGCAGTGAAGCATTCCCCTTCACAGCTTCATCAGAATTCCGTTACATCTGCCATTGCTGGAGACGAGCAGCCTGAATTTTCAGGAAAATTACACGTAGATTTGAAATTTTCAGATAAATCTTCCCATAGAACAGAATCAGGTAAAAGTCAAGATGAAACTTTGGTGAAAGATGAATCGTCAATAGAATATGGCAAACTCAATGGATTTGCCAGAGTAAATGACGATCGACAGGCCACTGGTGCAGAAAGTTCACAGAATGGAAATGATGCTAACGTGAAGTGTTGTTCTCAATCTACAAAAGGGGCAAAGAGGGCCTGGGAAGCCTCTTTGTCCTCATTGAAATCAAAAAGAGTGAAGGGAAGCCAGTTGGTTGACTATCAATCAGATTCTAGCTGCGGTTTTATCTTAGAGACTGATAAGGCCAATCCTTGTTTTGAAGAAGTCCCTCGTGATCCTTTGATTAAAAATAGTTCTGAAAAATGTGTTAGGGATAATTTGCATTTAGAGGCTCCAATCAACATAGAATTGCCATCAACTAAACAATGTTTTAGAATTATGTTGATGAATATTGCTGATGATGCTAAGAAAACACAGCTTACAAAGGTGATTGAAGACCTTGGTGGAACTATATCCTATGATGGAAGAATGACCACACACGTTGTCACAGGACAAGTGAGGAAGACTCTGAACTTCTGTACCGCCCTCTGTTCAGGTGCTTGGGTGATCTCATCAAGTTGGTTAAAAGAAAGTTGTCGTGAAGGCAGATTTGTTGATGAATTGCCTCACATACTGAATGATACGGATTATCTGCTGAAGTACAAATCTGATTTAAAAAGTGCAGTTTTCCGGGCAAAAGCTAGTCCCCATGCTTTGTTAAAGGGTTATAATATATGTATTGCAGCTCATGTTCAAACTCCCGCTAAAACACTGTCTGCAATTGTCAAGTCCGCAGGTGGTAATGTTATTAATGGACTCGAAAGGATAGACGAAACATCAAGAACAATCTTTGTGACGTGCGAAGAAGACACGGAAGAAGCAATGATAGCTGCAAAGAAAGGTATACGGACTTTCAGTAGCGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAGGCCTCCCAGTTTGCAGAGTCCTTATAA 1911 0.4055 MAPKRKPSSPISIGNCQITVEANRFTCSSDANGVVISLTRSGRIKVSAVAAEHGNASEDFRSEDKGHEFVLVNPKDVDGINKSYLQEVFQLYTTELPGMNYAANTGKQSKFLERCVNKGKYRTLIMKSTSVGNSGKVIAAITYQIIAADTEYAEIPLAAVNAIYQRKGFGHLLFIELRNRLQSVGIRSIFCWGDKESEGFWLKQGFTEIAQVDAKGRARRLPVKADIRKSLCFPGGSTLMVCHLRKEFLADNANAVKHSPSQLHQNSVTSAIAGDEQPEFSGKLHVDLKFSDKSSHRTESGKSQDETLVKDESSIEYGKLNGFARVNDDRQATGAESSQNGNDANVKCCSQSTKGAKRAWEASLSSLKSKRVKGSQLVDYQSDSSCGFILETDKANPCFEEVPRDPLIKNSSEKCVRDNLHLEAPINIELPSTKQCFRIMLMNIADDAKKTQLTKVIEDLGGTISYDGRMTTHVVTGQVRKTLNFCTALCSGAWVISSSWLKESCREGRFVDELPHILNDTDYLLKYKSDLKSAVFRAKASPHALLKGYNICIAAHVQTPAKTLSAIVKSAGGNVINGLERIDETSRTIFVTCEEDTEEAMIAAKKGIRTFSSEWFMNCVMRQELDLEASQFAESL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01916 636 Gene3D - 68 221 - -
Cca03g01916 636 MobiDBLite consensus disorder prediction 291 310 - -
Cca03g01916 636 CDD BRCT_PAXIP1_rpt6_like 545 626 - -
Cca03g01916 636 CDD NAT_SF 133 192 - -
Cca03g01916 636 SUPERFAMILY BRCT domain 438 520 IPR036420 -
Cca03g01916 636 SMART BRCT_7 543 623 IPR001357 -
Cca03g01916 636 SMART BRCT_7 431 508 IPR001357 -
Cca03g01916 636 Pfam BRCA1 C Terminus (BRCT) domain 445 504 IPR001357 -
Cca03g01916 636 Gene3D BRCT domain 429 542 IPR036420 -
Cca03g01916 636 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 78 212 IPR016181 -
Cca03g01916 636 ProSiteProfiles BRCT domain profile. 541 625 IPR001357 -
Cca03g01916 636 ProSiteProfiles BRCT domain profile. 439 518 IPR001357 -
Cca03g01916 636 PANTHER N-ACETYLTRANSFERASE 4 636 - -
Cca03g01916 636 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 4 636 - -
Cca03g01916 636 Gene3D BRCT domain 543 635 IPR036420 -
Cca03g01916 636 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 75 228 IPR000182 GO:0016407
Cca03g01916 636 SUPERFAMILY BRCT domain 540 625 IPR036420 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01916 - - gmx:100806087 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01916 03 38764161 38770198 Cca03g01916 03 38764161 38770198 ECH