Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01915 ATGGCTATGTTGTTGCCTACAATCATTGTTCCTTCTACCAAGCTCGTAACCTTCCCCAACAACACGCAAGACCGTGCACTTCCAACTTTTCGTCATTTCACAGATACTAGCAAGCGCTTCGAGAAAGTGTCGTCCTTTATTGCTTTTGCGGTGAACGGTGACTCCACTCCCGCTAAAGCCACACCAAGGAGAGATAGTAGAAACCCCTTATTGAGTGAAGGGAGAGATGAGGATGAAGCTAGAGGACCCATTTGCCCTGGTTGTGGAGTCTTCATGCAAGATAAGGATCCTAACCTTTTGGGGTTTTACCAACCAAGGAAGGTCAAAGTGGAAGAGTTTGAAGAGgatgaggatgatgatgatgatgatgatgattatgatgatgttgatgatATAGAAGAAGATGATGAAGAAGTGAGGTTTTTGAATGGAAGTGAGAATAAGCTTGGAGAAGAGAGTGAGGGTTTAATAGACGAGTTTGATTGGGATTCTGATGATTTGGAAGCTAAGTTACTGGGTGAAGATGATGAGAATTTGGATTTAGATGGGTTTGCACCTGCAGGAGTTGGGTATGGTAACATTACTGAGGAGTACTTggagaaggtaaagaagaagaaggtgaccaaagctcagaagaagaggatggccaaggaggctgacaaggagaaagaggaggTTACCGTTTGTGCTAGGTGCCACTCCTTGAGAAACTATGGCCAGGTGAAAAACCAGACGGCGGAGAATTTAATACCTGATTTTGATTTCGATAGGTTGATTTCAACGCGGTTGATGAACCCTTCTGGGAGTGGCAGTTCCACTGTTGTTGTCATGGTTGTGGATTGTGTTGATTTCGACGGCTCATTCCCTAGAACTGCGGTTAAATCGTTGTTTCAAGCGTTGGAAGGAATACAGGATAACTCAAAGCGGGCCAAGAAGATGCCAAAGCTTGTTCTTGTGGCAACCAAGGTTGATCTTCTTCCGTCGCAGGTTTCTCCAGCGAGGTTAGATAGATGGGTTCGAAACCGTGCAAGATCCGGAGGAGCGCCTAAGCTGAATGGGGTTTATATGGTCAGTGCAAGGAAGGATTTAGGTGTAAGGAATTTGTTGTCGTTCATAAAGAATTTGGCTGGTCCCCGTGGGAATGTTTGGGTAATCGGAGCTCAAAATGCAGGGAAGTCTACCCTGATCAATGCATTTGCAAAGAAACAAGGAGCTAAAGTTACGAAACTCACAGAAGCTCCAATTCCAGGAACAACACTTGGGATCTTGAGAATTGCGGGAGTTTTGCCGGCTAAGACTAAGATGTTTGACACTCCAGGGCTTTTGCACCCATATTTAATGTCAATGAGATTGAACCGGGATGAGCAAAAGATTGTTGAGATGCGGAAGGAACTTCGGCCTCGGTCATATAGAATTAAGGTAGGACAGGCTATACACATTGGTGGCTTGACAAGACTTGACCTTGTTGAAGCCTCTGTTGAAACAATATATGTCACAGTTTGGGCATCACCAAATGTTTCTCTTCACATGGGGAAAATAGAAAATGCTGATGAGGTTTGGAGAAATCATGTTGGTATCAGGCTGCAGCCTCCCATTGGCAACGACCGTGCTACAGAATTAGGAACATGGGAAGAAAGGGAAGTGAAAGTGTCTGGATCTAGTTGGGATGTCAACAGCGTAGACATAACAATAGCGGGTTTGGGTTGGTTCTCATTGGGTTTGAAAGGTGAAGCAACCACGAAATTGTGGAGCTTTGATGGAATTGAAGTAAGTTTGAGAGAACCTTTGGTGCTTGACCGGGCACCATTCCTTGAGAAGCCAGGATTTTGGTTACCGAAAGCCATCTCTGAAGCTATTGGCAACCAAACTAAACTTGAAGCTCAAAGAAGGAAACAACTTGAAGATGAGGATACCGAATACGTGGGGGCAGGGGCAGAGCTATCTGCATGA 1950 0.42 MAMLLPTIIVPSTKLVTFPNNTQDRALPTFRHFTDTSKRFEKVSSFIAFAVNGDSTPAKATPRRDSRNPLLSEGRDEDEARGPICPGCGVFMQDKDPNLLGFYQPRKVKVEEFEEDEDDDDDDDDYDDVDDIEEDDEEVRFLNGSENKLGEESEGLIDEFDWDSDDLEAKLLGEDDENLDLDGFAPAGVGYGNITEEYLEKVKKKKVTKAQKKRMAKEADKEKEEVTVCARCHSLRNYGQVKNQTAENLIPDFDFDRLISTRLMNPSGSGSSTVVVMVVDCVDFDGSFPRTAVKSLFQALEGIQDNSKRAKKMPKLVLVATKVDLLPSQVSPARLDRWVRNRARSGGAPKLNGVYMVSARKDLGVRNLLSFIKNLAGPRGNVWVIGAQNAGKSTLINAFAKKQGAKVTKLTEAPIPGTTLGILRIAGVLPAKTKMFDTPGLLHPYLMSMRLNRDEQKIVEMRKELRPRSYRIKVGQAIHIGGLTRLDLVEASVETIYVTVWASPNVSLHMGKIENADEVWRNHVGIRLQPPIGNDRATELGTWEEREVKVSGSSWDVNSVDITIAGLGWFSLGLKGEATTKLWSFDGIEVSLREPLVLDRAPFLEKPGFWLPKAISEAIGNQTKLEAQRRKQLEDEDTEYVGAGAELSA 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01915 649 Gene3D - 268 444 IPR027417 -
Cca03g01915 649 MobiDBLite consensus disorder prediction 66 81 - -
Cca03g01915 649 MobiDBLite consensus disorder prediction 54 81 - -
Cca03g01915 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 491 IPR027417 -
Cca03g01915 649 MobiDBLite consensus disorder prediction 628 649 - -
Cca03g01915 649 MobiDBLite consensus disorder prediction 113 130 - -
Cca03g01915 649 MobiDBLite consensus disorder prediction 111 130 - -
Cca03g01915 649 CDD YqeH 229 441 - -
Cca03g01915 649 PANTHER GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL 28 640 - -
Cca03g01915 649 PANTHER GTP-BINDING PROTEIN BRASSINAZOLE INSENSITIVE PALE GREEN 2, CHLOROPLASTIC 28 640 - -
Cca03g01915 649 Coils Coil 205 225 - -
Cca03g01915 649 Pfam 50S ribosome-binding GTPase 382 452 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01915 Cca-Chr3 38758486 38761721 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01915 - - gmx:100805561 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01915 03 38758486 38761721 Cca03g01915 03 38758486 38761721 ECH