Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01904 ATGAAGCTCATTAGCCTCACCCCCAAACGCCTCTTCCGCTCCAAAAGGGAACGCTCCAAGCTCTCCTCCCGATCCGACCCGCCTTCGTTTGGCTCCGGAtcctcctcctcctcctcctcctccGAGGGCTCCACCCACAAACCCCACACCCCCACCAGCGTCCTCCCCGACCTCGCCCAGGCCTTCCGCCTCATCGACCGCGACAACGACGGCCTCCTCACGCGCCACGACCTCGAGGCCCTCCTCACGCGCCTCGGCGCCCACGACGTACCCACCATGCTCACCGAGGTCCATGGGGACACCATCACCGTCGAGTCCCTCGTGGACCGTGTCGGCTCGGGTATGGAGTCCGGGTCGGACCCGGATGAGCTGAAAGAGGTGTTTCAAGTGTTCGACACGGATCGCGACGGGAGGATCTCGGCGGAGGAGCTGCTGAGGGTGTTCCGCGCCATCGGGGACGAGCGGTGCACCTTAGAGGAGTGCCGGCGCATGATAGAGGGAGTGGACAGAAACGGGGACGGGTTCGTCTGCTTCGAGGACTTCTCCCAGATGATGGACCTGCAGCACAACTGGTGA 576 0.6181 MKLISLTPKRLFRSKRERSKLSSRSDPPSFGSGSSSSSSSSEGSTHKPHTPTSVLPDLAQAFRLIDRDNDGLLTRHDLEALLTRLGAHDVPTMLTEVHGDTITVESLVDRVGSGMESGSDPDELKEVFQVFDTDRDGRISAEELLRVFRAIGDERCTLEECRRMIEGVDRNGDGFVCFEDFSQMMDLQHNW 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01904 191 CDD EFh 57 149 IPR002048 GO:0005509
Cca03g01904 191 CDD EFh 123 185 IPR002048 GO:0005509
Cca03g01904 191 SUPERFAMILY EF-hand 57 186 IPR011992 -
Cca03g01904 191 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
Cca03g01904 191 Gene3D - 115 190 - -
Cca03g01904 191 Pfam EF hand 168 185 IPR002048 GO:0005509
Cca03g01904 191 ProSitePatterns EF-hand calcium-binding domain. 169 181 IPR018247 -
Cca03g01904 191 Pfam EF-hand domain pair 57 148 IPR002048 GO:0005509
Cca03g01904 191 ProSiteProfiles EF-hand calcium-binding domain profile. 53 88 IPR002048 GO:0005509
Cca03g01904 191 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Cca03g01904 191 ProSitePatterns EF-hand calcium-binding domain. 66 78 IPR018247 -
Cca03g01904 191 MobiDBLite consensus disorder prediction 24 51 - -
Cca03g01904 191 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Cca03g01904 191 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 187 - -
Cca03g01904 191 SMART efh_1 123 151 IPR002048 GO:0005509
Cca03g01904 191 SMART efh_1 160 188 IPR002048 GO:0005509
Cca03g01904 191 SMART efh_1 57 85 IPR002048 GO:0005509
Cca03g01904 191 MobiDBLite consensus disorder prediction 1 54 - -
Cca03g01904 191 Gene3D - 55 114 - -
Cca03g01904 191 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 3 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01904 Cca-Chr3 38652683 38653650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01904 1 189 EF-hand Containing Proteins AT3G10190 51.429 3.20e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01904 K13448 - gmx:100790734 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01904 03 38652683 38653650 Cca03g01904 03 38652683 38653650 ECH