Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01900 ATGGCTCTAATCGCTGCTAGGATTCTTGGTTCGAATTCGAGACTCGCGGTTCCCCTCCGGCGCTGGCGGTGGCCGGCGTACTCCTCCGCCTCGGCTGCGGTGGCGGAGTCGGAGAGCACGGAGGTGAAGGACTACGCCGACTACCGGCGCTCCCTGTACGGACAGATCACGCACAAGGCCCTCCTCGTCGACGCCGTTGGCACACTCGTCCTCCCTTCCCAGCCCATGGCTCAGATATATAGAACGATTGGGGAGAAGTACGGTGTGGCGTATTCGGAGGAAGAGATACTCTACAGATACAGAACAGCGTACAGCCAGCCTTGGGGGAAATCTCGTCTCAGGTATGTTAATGATGGTAGGCCCTTTTGGCAATATATAGTTAGTTATTCTACCGGCTGTTCAGATCCCCAGTACTTTGAAGAACTGTATAACTATTATATGACAGACAAGGCATGGCACCTCAATGATCCTGGTGCAGAAGAAGTATTCAGAGCTCTTAGAAAATCTGGTGTGAAATTAGCTGTTGTGTCAAATTTTGACACTAGATTAAGACCTCTCCTGCGGGCATTAAATTGTGACAGTTGGTTTGATGCTGTGGCAGTGTCAGCTGAGGTTGCAGCGGAGAAACCAAATCCAACTATATTTCTCAAAGCATGTGAACTATTGGATGTAAAGCCTGAGGAAGCTGTTCATGTTGGGGATGACCGCAGAAATGATATATGGGGTGCCAGGGATGCAGGTTGTGATGCTTGGCTTTGGGGAAGCGATGTTCACTCCTTTAAGGAGGTAGCACAGAGGATTGGGATCCAGGTCTGA 816 0.5061 MALIAARILGSNSRLAVPLRRWRWPAYSSASAAVAESESTEVKDYADYRRSLYGQITHKALLVDAVGTLVLPSQPMAQIYRTIGEKYGVAYSEEEILYRYRTAYSQPWGKSRLRYVNDGRPFWQYIVSYSTGCSDPQYFEELYNYYMTDKAWHLNDPGAEEVFRALRKSGVKLAVVSNFDTRLRPLLRALNCDSWFDAVAVSAEVAAEKPNPTIFLKACELLDVKPEEAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFKEVAQRIGIQV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01900 271 SUPERFAMILY HAD-like 59 261 IPR036412 -
Cca03g01900 271 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 59 252 IPR011949 -
Cca03g01900 271 Pfam Haloacid dehalogenase-like hydrolase 67 250 IPR041492 -
Cca03g01900 271 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 59 253 - -
Cca03g01900 271 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 38 271 - -
Cca03g01900 271 CDD HAD_dREG-2_like 159 268 - -
Cca03g01900 271 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 58 69 IPR006439 -
Cca03g01900 271 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 166 179 IPR006439 -
Cca03g01900 271 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 196 212 IPR006439 -
Cca03g01900 271 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 214 234 IPR006439 -
Cca03g01900 271 SFLD Haloacid Dehalogenase 59 253 - -
Cca03g01900 271 Gene3D - 74 147 IPR044924 -
Cca03g01900 271 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 167 247 IPR006439 -
Cca03g01900 271 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 148 249 IPR006439 -
Cca03g01900 271 PANTHER - 38 271 - -
Cca03g01900 271 Gene3D - 63 255 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01900 Cca-Chr3 38566683 38570004 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01900 - - gmx:100789672 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01900 03 38566683 38570004 Cca03g01900 03 38566683 38570004 ECH