Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01895 ATGTTTTCTTCTTTAATTTCTCTCAAGCCTTTCCTTCACTCCCTCGTCCTTGATCGTTACGCTCAGAGCACAACTGCTGCAACCAGGTGGGAGTGCCTGGGGTTTAACAAGTCAGAGAATTTGAGTGCTAAGAGAGTGTTGTGTGTTGAGGGGTTCAAGCTGAATTGCTTGGTTGATAATAGAGAGATGAATGTGGAGTCATCATCTTCATCATCTTTGGTGAATGATGTATCTGGGTGCTTAAATGAAGAGGATTTAGGGGAGCCTAGTATTTCAACAATTGTGATGAATTTCGAGAATAAGTTTGATCCTTTTGGAGCAATTAGTCCCCCACTCTACCAAACGGCCACTTTTAAGCAGCCTTCTGCGGTAGAAAATGGTCCATATGACTATACTAGAAGTGGAAATCCTACCCGAGATGCTTTAGAAAGTTTACTGGCAAAACTTGATAAAGCAGATAGAGCCCTGTGCTTCACCAGTGGAATGGCTGCTTTGACTGCTGTTGCTCATCTTGTTGGAACTGGTGAGGAAATTGTTGCCGGAGATGATATATATGGTGGCTCAGATAGGTTGCTGTCTCAAGTAATTCCAAGGACTGGAGTTGTGGTGAAAAGGGTAAATACAAGTTATCTAAATGAGGTTGCATCTTCCATTGGACCCAGGACTAAGCTTGTGTGGCTTGAGAGTCCAACCAATCCTCGACTACAAATTTCTGATATTCGAGTAAGGTTGGGAAAGGAATTGTATTTCTTGCAAAATGCAGAGGGTTCAGGTTTAGCTCCATTTGACTGTTGGCTTTGTTTGCGAGGAATCAAGACAATGGCCCTGCGAGTTGAAAAGCAACAGGATAATGCACAAAAGATTGCTGAGTTCCTTGCGTCCCATCCTCGAGTGAAGAAAGTGAATTATGCTGGTTTACCCAGTCATCCTGGTCGTGATTTACACTATTCTCAGGCAAAGGGTGCTGGATCTGTGCTTAGCTTCTTGACAGGTTCACTGGCACTTTCAAGGCATATTGTTGAAACTACCAAATACTTCAGCATAACCGTCAGCTTTGGGAGTGTGAAGTCCTTAATCAGCTTGCCTTGCTTTATGTCACATGCAAGCATACCTACCACAGTTCGTGAGGCCAGAGGTTTAACTGAAGATCTTGTGCGTATATCTGTCGGAATTGAGGATGTCAATGATCTCATTGCTGATCTAGACAATGCACTCAGAACTGGGCCTTTATAA 1233 0.4331 MFSSLISLKPFLHSLVLDRYAQSTTAATRWECLGFNKSENLSAKRVLCVEGFKLNCLVDNREMNVESSSSSSLVNDVSGCLNEEDLGEPSISTIVMNFENKFDPFGAISPPLYQTATFKQPSAVENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALTAVAHLVGTGEEIVAGDDIYGGSDRLLSQVIPRTGVVVKRVNTSYLNEVASSIGPRTKLVWLESPTNPRLQISDIRVRLGKELYFLQNAEGSGLAPFDCWLCLRGIKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPSHPGRDLHYSQAKGAGSVLSFLTGSLALSRHIVETTKYFSITVSFGSVKSLISLPCFMSHASIPTTVREARGLTEDLVRISVGIEDVNDLIADLDNALRTGPL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01895 410 SUPERFAMILY PLP-dependent transferases 98 406 IPR015424 -
Cca03g01895 410 Gene3D - 90 246 IPR015421 GO:0003824
Cca03g01895 410 Gene3D Aspartate Aminotransferase, domain 1 275 408 IPR015422 GO:0003824
Cca03g01895 410 Pfam Cys/Met metabolism PLP-dependent enzyme 93 241 IPR000277 GO:0019346|GO:0030170
Cca03g01895 410 Pfam Cys/Met metabolism PLP-dependent enzyme 243 405 IPR000277 GO:0019346|GO:0030170
Cca03g01895 410 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 33 241 IPR000277 GO:0019346|GO:0030170
Cca03g01895 410 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 243 410 IPR000277 GO:0019346|GO:0030170
Cca03g01895 410 CDD CGS_like 106 406 IPR000277 GO:0019346|GO:0030170
Cca03g01895 410 PANTHER BNAC04G24570D PROTEIN 33 241 - -
Cca03g01895 410 PANTHER BNAC04G24570D PROTEIN 243 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01895 Cca-Chr3 38475890 38483200 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01895 K01760 - cit:102608399 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01895 03 38475890 38483200 Cca03g01895 03 38475890 38483200 ECH