Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01894 ATGGGTTGCTCAGCCTCAAGAACCATCACCATAGTGGCGAACAGTAACCAAGAGGATCcttctccttctgcttctcttacttcttctttctcctcttcttctgcttcACACAATTTTAATTCTTCACCACCAGTTAGAAGAAGAGCACTTTCTCTCCCAATGCCTCTTGTGCACCACCCTCCCATCAAAAAGGGTGACACACACCACCTTGTCTCACTCACCTCTACCACCTATGGCTCACTTCTCCTCATTGACCAAAAAGACCCCATCTTGAGCCACAAGGACCAACCCCACCTCAAGGACCAACCCTACCTCACCAAAACCTCAAACCAAGGTGAGCCAGAACAGTCACTGTCCCCAGACTCGGTCATCAACACTTGGGAACTCATGGATGGCTTGGATGAAGAAGATGaagaacaacaacaacaacaacaacaTTCCCTCCACACTACCAAGCCTCCTCTCACTTCCATTCTAGACAAACCAAGTTCATGCAGGTACACAGCCTTTGATGGCTCTGCAAAGAAGAAGCTCCTTGATTCCTTTGAATCACTGAAAACTTCGCGAATGCAAAAGGAAAACTCTTCTTCCACAGAATCAACATCAACCAAGAAGCCACTTTGGCAGCACTTGTCTGAGGAAGCTTTGCTTGCCAAGTTGGATCCAAGTGTGGCTTGGAGTTACAGGAGAGCATTATCATCAAGGCAACTAGGTAGGAACACTCTATCTAGAGATGTTAGATCAATGGGGTCTAGCCCTTTGAGATTTCCTTCTTCTTTTACATTTGGTAACAATAGTTTGTGCCGTTTGCCTGGCACTGAAGACAGAATAGTGCTCTATTGTACTAGCTTGAGAGGGATCCGAAAGACCTATGAGGATTGTTGTTCAGTGAGGATGATACTGAGGGGATTCAGAGTTGCGGTTGATGAGAGGGACATCTCAATGGACTCATCCTATAGGAAGGAGTTGCAAGATGCGCTTGGTGGCAAGGGTTTTACCTTGCCACAGGTGTTTATCAGAGGAAAGTATGTGGGAAATGCTGAGGAAATGAAACATCTGAATGAGTCTGGGGAATTGGCAAGGCTTTTGGAAGGGTTCCCCACTCAGGATCCTGGCTTTGTTTGTGACAACTGTGGTGATGCCAGGTTTGTGCCATGTCCCAATTGCAATGGTAGCAGGAAAGTGTTTCAGAATGGAGAAGGAGGATTGAGTAGGTGCCCTCATTGCAATGAGAATGGCTTGATTAGATGCCCAGGTTGCTGCTCATGA 1269 0.4413 MGCSASRTITIVANSNQEDPSPSASLTSSFSSSSASHNFNSSPPVRRRALSLPMPLVHHPPIKKGDTHHLVSLTSTTYGSLLLIDQKDPILSHKDQPHLKDQPYLTKTSNQGEPEQSLSPDSVINTWELMDGLDEEDEEQQQQQQHSLHTTKPPLTSILDKPSSCRYTAFDGSAKKKLLDSFESLKTSRMQKENSSSTESTSTKKPLWQHLSEEALLAKLDPSVAWSYRRALSSRQLGRNTLSRDVRSMGSSPLRFPSSFTFGNNSLCRLPGTEDRIVLYCTSLRGIRKTYEDCCSVRMILRGFRVAVDERDISMDSSYRKELQDALGGKGFTLPQVFIRGKYVGNAEEMKHLNESGELARLLEGFPTQDPGFVCDNCGDARFVPCPNCNGSRKVFQNGEGGLSRCPHCNENGLIRCPGCCS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01894 422 MobiDBLite consensus disorder prediction 93 160 - -
Cca03g01894 422 MobiDBLite consensus disorder prediction 102 124 - -
Cca03g01894 422 PANTHER GLUTAREDOXIN FAMILY PROTEIN 32 421 - -
Cca03g01894 422 Pfam Glutaredoxin 278 344 IPR002109 -
Cca03g01894 422 SUPERFAMILY Thioredoxin-like 273 364 IPR036249 -
Cca03g01894 422 PANTHER GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED 32 421 - -
Cca03g01894 422 MobiDBLite consensus disorder prediction 144 160 - -
Cca03g01894 422 CDD GRX_GRX_like 276 417 - -
Cca03g01894 422 ProSiteProfiles Glutaredoxin domain profile. 265 370 - -
Cca03g01894 422 MobiDBLite consensus disorder prediction 13 45 - -
Cca03g01894 422 MobiDBLite consensus disorder prediction 13 46 - -
Cca03g01894 422 Gene3D Glutaredoxin 275 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01894 Cca-Chr3 38455272 38457398 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01894 K17479 - gmx:100811817 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01894 03 38455272 38457398 Cca03g01894 03 38455272 38457398 ECH