Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01893 ATGGAGGAGAGAATGgaagaagcagaagaacaagaacaagTGAAAGGGTGTTTGAGCAAGTTCATCGACGATGGCACAGTGGAGAGTCACAGATACTACTTATCTCGCAAAACCACTCTCGAAATGCTCAGAGACAGAGGCTACTCTGTCTCCCCTCAAGATATCGACCTTTCTCTCTCCGAATTCCGCAACATCTACGGCCCTTCCCCCGACACCGACCGTCTCCGCCTCTCCCTCCCTCACGCCTCCAACCCCTCCAAAAGGGTTTTGGTCATTTTCTGTGGGACAGGGGTTGTCAAGGTCTCTGACGTGAGGAACATTTCGGGGCAGATTGTAAATAGGGAGACTTTGACTGGGTTGATTTTGATAGTGCAGAATAATATCACTAGCCAGGCCTTGAAAGCGGTCAATTCATTCTCCTTCAAGGTTGAAATTTTCCAGATCACGGACTTGCTTGTTAATATTACAAAGCATGTGTTGAAGCCAAAGCATCAGGTGCTGACTGATCGGCAGAAAAAAAATCTCCTGAAGAAGTACAATATCGAAGAAAAGCAGCTTCCCCGCATGCTACAGACAGATGCAATTGCACGATATTATGGACTTGAGAAGGGGCAAGTAGTTAAAGTTACCTATAGTGGTGAAATCACCCAGATGCATGTCACATATCGATGCGTTTGGTGA 681 0.4493 MEERMEEAEEQEQVKGCLSKFIDDGTVESHRYYLSRKTTLEMLRDRGYSVSPQDIDLSLSEFRNIYGPSPDTDRLRLSLPHASNPSKRVLVIFCGTGVVKVSDVRNISGQIVNRETLTGLILIVQNNITSQALKAVNSFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKYNIEEKQLPRMLQTDAIARYYGLEKGQVVKVTYSGEITQMHVTYRCVW 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01893 226 SUPERFAMILY RPB5-like RNA polymerase subunit 151 226 IPR035913 -
Cca03g01893 226 Pfam RNA polymerase Rpb5, N-terminal domain 28 109 IPR005571 GO:0003677|GO:0003899|GO:0006351
Cca03g01893 226 Gene3D - 23 150 IPR036710 GO:0003677|GO:0003899|GO:0006351
Cca03g01893 226 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 6 226 IPR014381 -
Cca03g01893 226 Pfam RNA polymerase Rpb5, C-terminal domain 153 225 IPR000783 GO:0003677|GO:0003899|GO:0006351
Cca03g01893 226 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 27 154 IPR036710 GO:0003677|GO:0003899|GO:0006351
Cca03g01893 226 PIRSF RPB5 21 226 IPR014381 -
Cca03g01893 226 Gene3D - 151 226 IPR035913 -
Cca03g01893 226 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 6 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01893 Cca-Chr3 38446017 38450376 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01893 K03013 - gmx:100306033 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01893 03 38446017 38450376 Cca03g01893 03 38446017 38450376 ECH