Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01892 ATGGACGCTAAGATGGGAAGCCTCTTCGAATCCATCGGAAACTTCTTCGGCGGCGGTGAGCAGATCCCGTGGTGCGACCGCGACGTCATCGCTGGCTGTGAAAGGGAAGTTGCAGAGGCTGCTAATGGTGACTCTGAGGAGCGGAAGAATGAGAGTATAATGAGGTTGTCATGGGCACTTGTTCATTCAAGGCAAAAGGAAGATATTCAACGTGGCATAGCCATGCTTGAAACTTCTTTGGGCAATGATAAAAGTCCTTTGCATCAAAGAGAGAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGTAATGACTATGCAAGGAGCCGGCAGCTTGTGGAGCAATGTTTGGAGATTGCTCCTGATTGGAGGCAGGCACTATCCCTCAAGAAAATAGTTGAAGACCGGATTGCTAAAGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGTGGGACTTATAGTTGGTGGCATTGCTACCGCATTGGCCCGGAGGAATTGA 504 0.4802 MDAKMGSLFESIGNFFGGGEQIPWCDRDVIAGCEREVAEAANGDSEERKNESIMRLSWALVHSRQKEDIQRGIAMLETSLGNDKSPLHQREKLYLLAVGYYRSNDYARSRQLVEQCLEIAPDWRQALSLKKIVEDRIAKDGVIGIGITATAVGLIVGGIATALARRN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01892 167 SUPERFAMILY TPR-like 10 166 IPR011990 GO:0005515
Cca03g01892 167 Gene3D Tetratricopeptide repeat domain 24 166 IPR011990 GO:0005515
Cca03g01892 167 PANTHER MITOCHONDRIAL FISSION 1 PROTEIN B 1 166 - -
Cca03g01892 167 Pfam Fis1 N-terminal tetratricopeptide repeat 51 80 IPR028058 -
Cca03g01892 167 Pfam Fis1 C-terminal tetratricopeptide repeat 90 142 IPR028061 -
Cca03g01892 167 PIRSF TPR_repeat_11_Fis1 4 166 IPR016543 GO:0000266
Cca03g01892 167 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 1 166 IPR016543 GO:0000266
Cca03g01892 167 CDD Fis1 23 141 IPR033745 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01892 K17969 - gmx:100785425 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01892 03 38441160 38444367 Cca03g01892 03 38441160 38444367 ECH