Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01888 ATGGATACTTTGCTCAAAACACCTAACAAGCTTGAGTTTTTGCACCCACTTCACGGTTACTCGGAAAAATTGAGCAATTTAGGTTCTTCTAGGTTGCAAAATCAGGAGCTTAGGTTTGGTTCAAAGAAGCCACATGTGAGGTGGGGTACATGTGGTAATTTGAGGGCTAGTAGTAGTGCCCTATTGGAGCTTGTTCCTGAATTTAAGAAGGAGAATCTGGATTTTGAGCTTCCTTTGTATGATTCCTCAAAGGGGGCAGTGGTGGATCTTGCAGTTGTGGGAGGGGGTCCCGCTGGGCTTGCAGTTGCACAGCAGGTTTCTGAGGCAGGGCTTTCTGTTTGTGCCATTGATCCAAACCCCAGATTGATTTGGCCCAACAATTATGGTGTTTGGGTGGATGAGTTTGAGGCCATGGATTTGCTTGATTGCCTTGACACCACTTGGTCTGGCGCCGTTGTCTTCATCGACGACAAGACCAAGAAGCATCTTGACAGGCCTTATGGCAGGGTCAATAGGAAGCTGCTGAAGTCCAAGATGCTGCAGAAATGCATATCAAATGGTGTGAAGTTTCACCAAGCTAAAGTTATCAAGGTTATTCATGAGGATGCCAAATCCTTGCTCATTTGTAATGATGGTGTAACTGTTCAGGCTACTGTGGTTCTAGATGCAACTGGATTTTCAAGGTGCCTTGTTCAGTATGATAAACCGTATAATCCAGGTTACCAAGTTGCTTATGGGATTTTGGCTGAGGTTGATGAACACCCTTTTGATGTAGATAAAATGCTTTTTATGGACTGGAGAGATTCTCATCTGGACAATGACATGGAGCTGAAGCAGAGAAATGGTAACATCCCCACCTTTCTGTATGCAATGCCCTTTTCATCCACCAAGATATTTCTTGAAGAAACTTCTCTTGTAGCACGCCCTGGTTTACGAATGGATGATATACAGGAAAGAATGGTTGCTAGGTTGAAACATTTGGGTATTAGAGTGAAAAGCATTGAAGAAGATGAGCACTGTGTGATTCCAATGGGTGGCCCTCTCCCAGTTCTCCCCCAAAGAGTCGTTGGCATTGGTGGCACCGCTGGGATGGTGCATCCTTCAACTGGCTATATGGTGGCAAGGACCCTGGCTGCAGCTCCTATTGTTGCTAATTCTATTGTTCAGTGCCTTGGTTCTGATAGAGGCCTTTCAGGAGCTGAAATATCTGCACAAGTGTGGAAAGATTTATGGCCTATTGAAAGGAGACGACAAAGGGAGTTCTTCTGTTTTGGTATGGACATCTTACTCAAGCTTGATTTACCAGGCACAAGGAGATTTTTTGATGCGTTTTTTGATCTGGAACCCCATTACTGGCATGGATTCTTGTCATCAAGACTGTTTCTTCCTGAGCTCTTATTTTTTGGATTGTCTCTATTTTCTTATGCTTCTAATACATCTAGGTTAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAACATGATCAACAACTTGGTAAAAGATACAGAATAA 1515 0.4356 MDTLLKTPNKLEFLHPLHGYSEKLSNLGSSRLQNQELRFGSKKPHVRWGTCGNLRASSSALLELVPEFKKENLDFELPLYDSSKGAVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVFIDDKTKKHLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEDAKSLLICNDGVTVQATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLDNDMELKQRNGNIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQERMVARLKHLGIRVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQCLGSDRGLSGAEISAQVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLFFGLSLFSYASNTSRLEIMAKGTLPLVNMINNLVKDTE 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01888 504 PANTHER UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 6 504 - -
Cca03g01888 504 TIGRFAM carotene-cycl: lycopene cyclase family protein 89 484 IPR010108 GO:0016117|GO:0016705
Cca03g01888 504 PANTHER LYCOPENE BETA CYCLASE, CHLOROPLASTIC 6 504 - -
Cca03g01888 504 SUPERFAMILY FAD/NAD(P)-binding domain 88 471 IPR036188 -
Cca03g01888 504 Pfam Lycopene cyclase protein 89 481 - -
Cca03g01888 504 Gene3D - 86 429 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01888 Cca-Chr3 38416297 38418611 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01888 K06443 - gmx:100783830 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01888 03 38416297 38418611 Cca03g01888 03 38416297 38418611 ECH