Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01887 ATGGGTGATTCATCGGAGGATTTCTCGGTGGTGGTGTTGGCCTCCGACCTCGGCGTCGATGCACGACCCTTCCTACAACATGATCAACAACAAGAAGAAGAAAATTGGCACGATTGTTCCCAATACCTTTCCCCCGACGAGGACTTCTCCGATCTCGATCTCTTGCAATTCCTCCGCTTCCAAGGCTCCGACAAAAACTCCAGTCCCATTCTCCGTATCGTCGGCAAGTACTTTCCCGCGACTGTTGTGAGTGCAGAGCGGCTGAAGAAGTATGTGTTACACAAAATTTGCAGTGAGTTGCAGGAAGGGCCGTTCTGTATTGTTTACATGCACAGCACTGTTCAGAAGGAGGATAATTCCCCTGGCTTAACCATCTTAAGGTGGATTTATGAAGAACTTCCAGATGATTTCAAGGACAGGCTTCAAACTGTGTATTTCGTCCATCCTGGTCTTCGTTCCCGGCTTGTCATCGCCACTCTTGGCCGGTTTTTCTTGAGTGGGGGGTTATATTGGAAGATCAAGTATGTTAGCCGGCTTCAGTACCTTTGGGATGATATCAAGAAAGGAGAGATTGAGATACCAGATTTTGTGAAAAGTCACGATGATATTCTGGAGAATAGACCCCTCACAGATTATGGCATTGAACCTGACCCCTTTCACTTAACTGGGATGCCTTCATCTACCTTTTCATTTGGAAAGTACGAGGATAGATGGGCCGCAAGAGAATATGTATCTTAG 738 0.4675 MGDSSEDFSVVVLASDLGVDARPFLQHDQQQEEENWHDCSQYLSPDEDFSDLDLLQFLRFQGSDKNSSPILRIVGKYFPATVVSAERLKKYVLHKICSELQEGPFCIVYMHSTVQKEDNSPGLTILRWIYEELPDDFKDRLQTVYFVHPGLRSRLVIATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGMPSSTFSFGKYEDRWAAREYVS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01887 245 SMART sec14_4 51 202 IPR001251 -
Cca03g01887 245 PANTHER OS01G0948300 PROTEIN 3 244 - -
Cca03g01887 245 SUPERFAMILY CRAL/TRIO domain 59 190 IPR036865 -
Cca03g01887 245 Gene3D - 46 192 IPR036865 -
Cca03g01887 245 Pfam Divergent CRAL/TRIO domain 68 201 IPR001251 -
Cca03g01887 245 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 3 244 - -
Cca03g01887 245 CDD SEC14 46 198 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01887 Cca-Chr3 38411302 38413565 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01887 - - gmx:100527837 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01887 03 38411302 38413565 Cca03g01887 03 38411302 38413565 ECH