Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01884 ATGGCGCTGCACTCCGTGTCTTCCGTCTCTCACGTGCTGCGCCTCTGTGAGCCCTTCCCTTCCATCCACAACGCTCACGTGCTCCACGACCTTGCGCCACTCCGCCACAAGTCCAAGCGCCGCAGCCGCAGATTGACGCCGTTTCCCGCTCCCTCGCTGCTCCGTCATTCCTCCGTCAAGGCCGTTCTCCACCTTGACCGCTCTGCCGACAACCGCCTCCATCATTCGCCTGCTTCCTCTTCTTCCGATTCCAAGCCACAGTCACTTGTTGGACAGGTTGCAAACTTGGAGGACATAATATCAGAGAGAGGAGCCTGTGGCGTTGGATTCATTGCCAATTTGGAGAATAAGGGATCACATGAGATTGTCAAGAATGCTTTAAATGCTTTAAGTTGTATGGAACATCGTGGTGGCTGTGGAGCAGATAATGACTCTGGTGATGGTTCAGGGCTGATGACTGCAGTTCCATGGGATCTATTTGATAATTGGGCCAGCAAGCAAGGGATTTCTTCCTTTGATAAGTTGCACACTGGTGTTGGAATGGTCTTCTTACCCAAAGATGCAAAACTTCTCAATGAGGCAAAGAAAGTTATTGTAAATACTTTTCGGCAAGAAGGTCTTGAGGTTCTTGGTTGGAGGCCTGTCCCTGTAAATACTTCTGTAGTAGGTTATTATGCGAAGGAGACCATGCCCAATATACAGCAGGTATTTGTTAAGATTGTGAAAGAAGAAAATGTTGATGACATTGAACGAGAACTGTACATCTGTCGAAAATTGATTGAAAAAGCAGTGAGCTCAGAAAGTTGGGGAAATGAGCTTTATTTCTGTTCTTTATCCAATCAAACCATAGTTTACAAGGGGATGCTTCGTTCAGAAGTGCTTGGGTTATTTTATTCTGACCTTCAAGATGATCTATACAAGTCCCCTTTTGCCATATATCATCGAAGGTACAGCACAAATACTAGTCCCAGGTGGCCTCTTGCACAACCAATGAGGCTTCTTGGTCATAATGGAGAGATCAACACCATACAGGGGAACTTGAATTGGATGCAATCACGAGAACCATCATTGAAGTCACCTGTATGGCGAGGTCGTGAGAATGAAATTCGCCCATACGGAAATCCGAAGGCATCAGACTCTGCAAATCTTGACAGTACTGCAGAATTATTGATAAGAAGTGGTCGAAGTCCTGAGGAAGCTATGATGATTCTTGTTCCAGAGGCTTACAAAAATCATCCAACTCTGTCAATCAAATATCCTGAGGTGGTTGACTTCTATGACTACTACAAGGGTCAGATGGAAGCTTGGGATGGACCGGCCTTGCTTTTGTTCAGTGATGGGAAAACTGTTGGTGCATGCCTTGATCGTAATGGTCTTCGACCTGCTAGGTATTGGCGAACATCAGACAATATGGTCTATGTTGCCTCTGAGGTTGGTGTTGTGCCAGTGGATGAGTCAAAGGTTGTCTTGAAAGGCCGTCTAGGTCCTGGCATGATGATAACAGTTGATTTGCTTGGTGGTCAGGTCTATGAGAATACAGAGGTTAAAAAACGAGTAGCCTTATCAAACCCATATGGGAACTGGATCAAGGAAAATTTGCGGTCTTTGAAGCCTGGAAACTTCCTTTCAGCTTCTGTGATGGACAATGATGCAGTATTAAGACAACAACAGGCATTTGGGTACTCTAGTGAAGATGTCCAGATGGTGATTGAGAGTATGGCTGCTCAAGGAAAGGAGCCCACATTTTGCATGGGAGATGATATTCCATTGGCAGCTTTGTCCCAGAAACCTCACATGCTTTTTGATTATTTCAAGCAAAGGTTTGCACAGGTTACAAATCCTGCAATTGATCCTCTTCGAGAAGGACTGGTTATGTCTCTTGAAGTGAATATAGGGAAGCGAAGGAATATATTGGAAATTGGGGCAGAGAATGCTTCACAGGTTATGTTATCTAGTCCAGTGTTGAATGAAGGGGATCTTGAGTCATTACTAAAAGACTCCCACTTAAAACCACAAGTGTTACCGACATTTTTTGATATAACCAAGGGCATTGAAGGTTCCCTGGAGAAAGCATTAAATAAGCTTTGTGAAGCTGCAGATGAAGCTGTCAGAAATGGTTCTCAGCTGCTTGTTCTCTCAGACCGTTCAGAAGCACTGGAACCAACTCATCCTGCAATTCCAATACTTCTTGCTGTTGGTACTGTTCATCAGCATCTAATACAGAATGGCCTGCGGATGTCAGCTTCAATTGTAGCAGATACTGCTCAATGCTTTAGCACTCACCAGTTTGCCTGTTTAATAGGATATGGTGCAAGTGCTGTGTGTCCATACTTGGCATTGGAGACTTGTCGGCAATGGCGTTTGAGTAATAAAACTGTAAATCTGATGAGGAACGGGAAGATGCCTACTGTATCGATTGAACAGGCACAGAAGAACTATTGTAAGGCTGTAAAAGCAGGTCTTCTTAAAATTCTTTCCAAAATGGGCATCTCATTGCTTTCAAGTTACTGTGGTGCACAAATATTTGAAGTCTATGGATTAGGAAAGGAAGTTGTTGATATTGCATTCAGAGGAAGTGTGTCGAAAATTGGTGGATTAACTTTTGATGAGGTGGCAAGAGAGACTTTGTCTTTCTGGGTTAAGGCATTTTCTGAAGATACAGCTAAAAGGTTGGAAAATTTTGGATTTATACAGTTCAGACCAGGAGGGGAATATCATGCAAATAACCCAGAAATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAGAAAAGTCAAAGTGCCTTTTCAGTTTATCAGCAGTATTTGGCTAATCGACCCGTGAATGTTCTCCGTGATCTTCTTGAATTCAAAAGTGATCGTGCTCCAATACCTGTGGGGAAGGTTGAACCTGCTACATCTATTGTGCAACGGTTTTGCACTGGGGGCATGTCACTTGGAGCTATTTCCAGAGAAACTCATGAAGCAATTGCAATTGCCATGAACAGAATAGGTGGAAAATCAAACTCAGGGGAAGGTGGTGAGGATCCTATTAGATGGAAACCACTTACAGATGTCGTTGATGGTTATTCTCCAACTCTTCCACACCTTAAAGGTCTTCAAAATGGGGATACTGCTACTAGTGCCATCAAGCAGGTTGCTTCAGGAAGGTTTGGTGTCACCCCGACATTCTTGGCAAATGCTGATCAATTAGAAATCAAGATTGCACAAGGTGCAAAACCTGGTGAAGGTGGACAATTGCCAGGGAAAAAAGTTAGCATGTATATTGCAAGATTGAGAAATTCTAAACCAGGAGTTCCTCTTATATCTCCACCACCTCATCATGACATTTATTCTATTGAGGACCTTGCTCAATTGATCTTTGATCTTCATCAGGTAAACCCTAAGGCCAAGGTGTCAGTAAAACTGGTGGCTGAAGCTGGAATTGGCACTGTTGCATCTGGGGTTGCCAAGGGCAATGCTGACATTATACAGATTTCAGGACATGATGGGGGAACAGGAGCAAGCCCTATTAGTTCCATCAAGCATGCAGGAGGTCCTTGGGAACTTGGGCTTACAGAATCTCACCAGACACTTATTGAAAATGGACTGAGAGAAAGGGTTATTCTCAGAGTTGATGGTGGATTTAGAAGTGGAGTTGATGTCATGATGGCAGCAATAATGGGTGCTGATGAATATGGGTTTGGTTCAGTGGCAATGATTGCTACTGGATGTGTTATGGCCCGCATTTGCCACACCAATAATTGCCCAGTTGGTGTTGCCAGTCAGAGGGAAGAGTTGCGAGCTCGTTTTCCTGGTGTTCCTGGTGATCTTGTCAACTACTTTTTGTATGTAGCTGAGGAGGTAAGAGGCGTATTGGCACAGCTGGGGTATGAGAAGTTGGATGATGTGATTGGCCGGACTGACTTGTTGCAACCAAGAGACATATCTCTAGCAAAAACTCAGCATCTAGATCTGAATTATATCCTATCTAGTGTTGGGTTACCTAAATGGAGCAGTACACAAATTAGGAATCAGGAGCCTCATACCAATGGTCCTGTTCTGGATGATGTTTTGCTAGCAGACCCGGAGGTTGCAGATGCCATTGAAAATGAAAAGGTGGTTAATAAGACCATAAAAATATTCAACATTGATCGTGCTGTTTGTGGACGCATATCCGGTGCCATTGCAAAGAAGTACGGTGACACTGGTTTTGCTGGACAGTTGAATATAACATTTACAGGAAGTGCTGGGCAGTCATTTGCATGCTTTCTGACACCTGGAATGAACATTCGCCTGGTAGGAGAGGCTAATGATTATGTTGGGAAGGGCATTGCTGGTGGTGAGTTGGTTATCACTCCAGTTGACAAGACAGGGTTTGAACCTGAGGATGCAGCTATTGTAGGGAATACTTGCTTGTATGGGGCAACTGGTGGACAGGTCTTTGTTAGAGGGAGAGCTGGGGAAAGATTTGCTGTCAGAAACTCACTTGCGGAAGCTGTGGTTGAAGGCACAGGAGATCATTGTTGTGAGTACATGACTGGTGGTTGTGTGGTTATCTTGGGAAAAGTGGGTAGAAATGTAGCTGCTGGAATGACAGGAGGATTGGCTTACATTCTTGATGAGGACAATACTCTCATACCCAAGGTAAACAGAGAAATTGTAAAAATCCAACGGGTGTCAGCCCCTGTTGGGCAGATGCAACTGAAGAGCCTGATTGAAGCTCATGTTGAAAAAACCGGTAGTGGCAAAGGTGCGGCTATTCTGAAGGAGTGGGACAAGTACTTATCACTATTTTGGCAGCTGGTTCCACCTAGTGAAGAGGATACCCCTGAGGCAAGTGCCGATTATGACACAACTACGGCAGAACAGATAAGTTTTCAGTCTGCCTAG 4869 0.4432 MALHSVSSVSHVLRLCEPFPSIHNAHVLHDLAPLRHKSKRRSRRLTPFPAPSLLRHSSVKAVLHLDRSADNRLHHSPASSSSDSKPQSLVGQVANLEDIISERGACGVGFIANLENKGSHEIVKNALNALSCMEHRGGCGADNDSGDGSGLMTAVPWDLFDNWASKQGISSFDKLHTGVGMVFLPKDAKLLNEAKKVIVNTFRQEGLEVLGWRPVPVNTSVVGYYAKETMPNIQQVFVKIVKEENVDDIERELYICRKLIEKAVSSESWGNELYFCSLSNQTIVYKGMLRSEVLGLFYSDLQDDLYKSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLKSPVWRGRENEIRPYGNPKASDSANLDSTAELLIRSGRSPEEAMMILVPEAYKNHPTLSIKYPEVVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTSDNMVYVASEVGVVPVDESKVVLKGRLGPGMMITVDLLGGQVYENTEVKKRVALSNPYGNWIKENLRSLKPGNFLSASVMDNDAVLRQQQAFGYSSEDVQMVIESMAAQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRRNILEIGAENASQVMLSSPVLNEGDLESLLKDSHLKPQVLPTFFDITKGIEGSLEKALNKLCEAADEAVRNGSQLLVLSDRSEALEPTHPAIPILLAVGTVHQHLIQNGLRMSASIVADTAQCFSTHQFACLIGYGASAVCPYLALETCRQWRLSNKTVNLMRNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEVYGLGKEVVDIAFRGSVSKIGGLTFDEVARETLSFWVKAFSEDTAKRLENFGFIQFRPGGEYHANNPEMSKLLHKAVRQKSQSAFSVYQQYLANRPVNVLRDLLEFKSDRAPIPVGKVEPATSIVQRFCTGGMSLGAISRETHEAIAIAMNRIGGKSNSGEGGEDPIRWKPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTESHQTLIENGLRERVILRVDGGFRSGVDVMMAAIMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLYVAEEVRGVLAQLGYEKLDDVIGRTDLLQPRDISLAKTQHLDLNYILSSVGLPKWSSTQIRNQEPHTNGPVLDDVLLADPEVADAIENEKVVNKTIKIFNIDRAVCGRISGAIAKKYGDTGFAGQLNITFTGSAGQSFACFLTPGMNIRLVGEANDYVGKGIAGGELVITPVDKTGFEPEDAAIVGNTCLYGATGGQVFVRGRAGERFAVRNSLAEAVVEGTGDHCCEYMTGGCVVILGKVGRNVAAGMTGGLAYILDEDNTLIPKVNREIVKIQRVSAPVGQMQLKSLIEAHVEKTGSGKGAAILKEWDKYLSLFWQLVPPSEEDTPEASADYDTTTAEQISFQSA 1622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01884 1622 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1340 1603 IPR036485 GO:0016491
Cca03g01884 1622 Gene3D Aldolase class I 580 1306 IPR013785 -
Cca03g01884 1622 CDD gltB_C 1347 1597 IPR002489 GO:0016491
Cca03g01884 1622 SUPERFAMILY FMN-linked oxidoreductases 549 1328 - -
Cca03g01884 1622 CDD GltS_FMN 909 1304 IPR002932 GO:0006537|GO:0015930|GO:0016638
Cca03g01884 1622 Gene3D Aldolase class I 532 898 IPR013785 -
Cca03g01884 1622 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 106 505 IPR017932 -
Cca03g01884 1622 Gene3D - 1328 1603 IPR036485 GO:0016491
Cca03g01884 1622 CDD GltS 106 523 - -
Cca03g01884 1622 Pfam Glutamine amidotransferases class-II 106 528 IPR017932 -
Cca03g01884 1622 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 106 642 IPR029055 -
Cca03g01884 1622 PANTHER FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, CHLOROPLASTIC/MITOCHONDRIAL 80 1621 - -
Cca03g01884 1622 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 106 532 IPR029055 -
Cca03g01884 1622 Pfam GXGXG motif 1372 1554 IPR002489 GO:0016491
Cca03g01884 1622 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 80 1621 - -
Cca03g01884 1622 Pfam Conserved region in glutamate synthase 906 1290 IPR002932 GO:0006537|GO:0015930|GO:0016638
Cca03g01884 1622 Pfam Glutamate synthase central domain 555 847 IPR006982 GO:0006807|GO:0015930
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01884 Cca-Chr3 38291961 38319388 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01884 K00284 - gmx:100809299 3086.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01884 03 38291961 38319388 Cca03g01884 03 38291961 38319388 ECH