LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g01878	ATGGCCACCAGCCACATTGGGAATGCCGGAGACGCCGACGCCAAGTCCTTCAAGCCTCGCCCCAAGAAGCCCTCCGACGACTTCATCTCCCACTTCCACGGCTCCGATCCCATCCGCGTCGAGCTCACGCGCCTCCATAACGAACTTCGAGAGAAAGATAGAGAGCTTGGGGATGCTCTTGCGGAAATTAAGTCCTTGAGGAATTCGGAGCGTCTTAAGGGGAAGGGGGTTGAAGAGCTAACAGATGAGCTGAACAAGGTGGATGAAAAGCTGAAAACAGCTGAAGCTCTTCTGGAAAGTAAGAACCTTGAAATAAAAAAAATCAATGAGGAGAAAAAGGCAGCACTGGCTGCACAATTTTCTGCAGAAGCCACACTTAGAAGGGTTCATGCTGCACAGAAAGATGATGAAATGCCTCCTATTGAAGCTATTATTGCACCCCTGGAGGCAGAGCTCAAGCTTGCTAGGATGGAGGTGGCAAAGTTACAGGATGACAACAGAGCATTAGATCGACTAACCAAATCGAAGGAGGCTGCACTTCTTGAGGCTGAGAGAACTGTTCAGATTGCTTTGGCAAAAGCATCCTTGGTTGATGATCTGCAAAACAAAAATCAAGAGTTAATGAAACAAATTGAAATATGCCAGGAGGAGAACAAAATTTTGGACAAAATGCTTCGGCAAAAGGTTGCTGAGGTTGAAAAACTTACCCAAACTGTCCGTGAGCTTGAAGAGGCTGTCTTGGCTGGTGGGGCTGCTGCTAATGCTGTCCGTGATTATCAGCGTAAAGTGCAAGAGATGAATGAGGAAAGGAAAATTTTGGAGCGGGAAGTAGCTCGTGCCAAAGTTACTGCAAACAGGGTTGCAACTGTAGTTGCAAATGAGTGGAAAGATGCTAATGATAAAGTGATGCCCGTGAAGCAGTGGCTAGAAGAAAGAAAATTTTTTCAGGGTGAAATGCAACAATTACGTGATAAATTGGCCATAGCTGAGCGCACTGCAAAGGCAGAGGCACAAATGAAGGAAAAATATCAATTGCGCTTCAAAGTTTTGGAAGAAAGGGTTAAAGCATCTAATGGTAATTCCAAATTCACTGTATCAGATGGAAGAAACATTGCCACTGGGCCTTCAAGGCGACAGTCTTTTGGTGGAGCTGAGAGTCTCTCTGCATCCTCTTTCAATGGATATGTATCAAGGAAAAACTCAATTTCACGATCAGGGTCTCTAAGATCAAATAGTGCTAATGTGTTACTAAAACATGCCAAACTGTCATCTAGATCATTCGATGGTGCTAGTAGAAACCTGGAGAGAGAGAGGTCATCTTTGGTTTCTAATGGGCTAGATAACATGCCAACAAATACCAATAATCATACCATCCCCAGTGAGACAACTTGTACAAATGAGGAGAGTGCAAATGGTACTCCAGTTGAAAAATCTAAAGCAGAAAATGAAGACTATGTTTCAGGAATGCTGTATGACATGTTGCAAAAAGAGGTTATATCTCTGAGGAAAGCTTGTCATGAAAAAGATCAGACTCTTAAAGACAAAGATGATGCAATAGAGATGTTGGCAAAGAAGGTTGATACATTGAACAAGGCTATGGAAGTTGAGGCCAGAAAAATGCGAAGGGAAGTAGCCTCTATGGAAAAGGAGGTTGCCGCAATGCGGATTAGCAAGGAACATGATCCGAGGGTACGGCGATCTAGTGCTCCTAGGGGGGCTGTAAATTCACAGTCAATTTCTGCCAGGAGTGCGCGTAACTTTTAG	1764	0.4427	MATSHIGNAGDADAKSFKPRPKKPSDDFISHFHGSDPIRVELTRLHNELREKDRELGDALAEIKSLRNSERLKGKGVEELTDELNKVDEKLKTAEALLESKNLEIKKINEEKKAALAAQFSAEATLRRVHAAQKDDEMPPIEAIIAPLEAELKLARMEVAKLQDDNRALDRLTKSKEAALLEAERTVQIALAKASLVDDLQNKNQELMKQIEICQEENKILDKMLRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKILEREVARAKVTANRVATVVANEWKDANDKVMPVKQWLEERKFFQGEMQQLRDKLAIAERTAKAEAQMKEKYQLRFKVLEERVKASNGNSKFTVSDGRNIATGPSRRQSFGGAESLSASSFNGYVSRKNSISRSGSLRSNSANVLLKHAKLSSRSFDGASRNLERERSSLVSNGLDNMPTNTNNHTIPSETTCTNEESANGTPVEKSKAENEDYVSGMLYDMLQKEVISLRKACHEKDQTLKDKDDAIEMLAKKVDTLNKAMEVEARKMRREVASMEKEVAAMRISKEHDPRVRRSSAPRGAVNSQSISARSARNF	587

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g01878	587	MobiDBLite	consensus disorder prediction	365	388	-	-
	Cca03g01878	587	Coils	Coil	145	172	-	-
	Cca03g01878	587	Coils	Coil	305	339	-	-
	Cca03g01878	587	Coils	Coil	512	557	-	-
	Cca03g01878	587	Pfam	Microtubule-associated protein 70	26	578	IPR009768	GO:0007010\|GO:0008017
	Cca03g01878	587	MobiDBLite	consensus disorder prediction	443	480	-	-
	Cca03g01878	587	MobiDBLite	consensus disorder prediction	570	587	-	-
	Cca03g01878	587	PANTHER	MICROTUBULE-ASSOCIATED PROTEIN 70-1-LIKE	23	582	-	-
	Cca03g01878	587	Coils	Coil	77	118	-	-
	Cca03g01878	587	MobiDBLite	consensus disorder prediction	555	587	-	-
	Cca03g01878	587	PANTHER	MICROTUBULE-ASSOCIATED PROTEIN 70-2	23	582	IPR009768	GO:0007010\|GO:0008017
	Cca03g01878	587	Coils	Coil	197	245	-	-
	Cca03g01878	587	Coils	Coil	42	69	-	-
	Cca03g01878	587	MobiDBLite	consensus disorder prediction	1	32	-	-
	Cca03g01878	587	Coils	Coil	256	283	-	-
	Cca03g01878	587	MobiDBLite	consensus disorder prediction	443	476	-	-
	Cca03g01878	587	MobiDBLite	consensus disorder prediction	15	32	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g01878	Cca-Chr3	38147938	38153182	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g01878	-		-	gmx:100814485	992.645

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g01878	03	38147938	38153182	Cca03g01878	03	38147938	38153182	ECH