Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01877 ATGGCACATGCTCTTCTAATTCGCCCTCCTCTGCTTCGCTTCATGGCCTCTCGCTTCCTCACCTCCTCTTCCATTCACACGCGTTTTTCTTCGTTCCCTCCTTCTACGCTCTCCAAGCCCAGGACAAGTTTTCCTCTGAGGAAATTTTGGGTTCCATGTTCGGTGCCCAATGCGGTCACTCCAAGGGCGTTTATGTCTTCTATCTCGACCCCCGAAGCTTTTCAGAAAAATGAAAATTCCACTGCTTATGGTTCTGATCAAATTCAGGTGCTTGAAGGCTTGGATCCTGTGAGGAAAAGGCCTGGGATGTATATTGGAAGCACTGGTCCACGTGGTTTGCACCATTTGGTGTATGAAATTTTGGATAATGCTGTTGACGAAGCTCAAGCTGGGTTTGCTTCCAAGATTGATGTTGTTTTGCTCGCTGATGATTCTGTGTGCATCACGGACAATGGTCGTGGGATTCCTACTGACTTGCATCCTGTTACAAATAAATCTGCCTTGGAGACAGTGTTGACGGTCTTGCATGCTGGTGGAAAATTTGGTGGTGTCAACAGTGGCTACTCTGTATCAGGTGGTTTACATGGCGTGGGTTTGTCTGTTGTTAATGCCTTGTCTGAGTTGCTAGAGATAACAGTTTGGCGTGATGGAATGGAATACATGCAAACATATGCTCGTGGAAAGCCAGTGACAATTCTGAAATGCCTTGTGCTTCCAGATGAAAGGAAAGATCTTCGAGGGACATGTGTCAGATTTTGGCCTGACAAAGAAGTATTTACCACTGCTATTCAGTTTGATTATAACACAATAGCTGGACGCATTAGGGAGTTAGCTTTCCTCAACCCAAAGCTTACAATCACGCTTCGGAAAGAAGACACTGATCCAGAAAAAGTCCAATATAATGAATACTTCTATGCTGGGGGATTGGTTGAATATGTGAAATGGCTCAACACTGACAAGAAAGCTCTTCATGATGTTCTGAGTTTTAGAAAAGAAACAGATGGAATAACAGTTGATATAGCTTTTCAATGGTGTGAAGATGCATATTCTGATACAATACTGGGATATGCTAATAGTATACGCACTATTGATGGTGGCACTCATATCGATGCTATGAAGGCTTCTATAACAAGAACACTGAATAGTCTTGGAAAGAAGTCAAAAGTTATCAAGGAAAAGGATATTACTCTAAGTGGTGAGCATGTGAGAGAGGGTCTAACATGTGTTGTCTCAGTCAAGGTCCCAAATCCTGAGTTTGAAGGGCAAACAAAGACAAGGTTAGGAAATCCAGAGGTGCGAAAAGTTGTTGATCAATCTATTCAAGACTATCTTACTGAGTATTTAGAATTGCATCCAGATGTTCTTGATTCAGTACTTTCTAAAGCTCTTAATGCTTTTAAGGCAGCTCTGGCAGCAAAAAGAGCAAGGGAATTGGTGAGACAAAAGAGTGTATTGAAATCTTCATCTCTCCCAGGAAAACTTGCTGATTGTTCATCTACAAATCCTGAAGAATGTGAAATCTTTATAGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAGCAAGGGCGTGACAGGCGCTTCCAGGCCATTCTCCCTCTGCGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTAATTCTTGCGCTTGGTCTCGGAGTGAAGGGAGAGGATTTTAAAAAGGATGCACTCCGATATCATAAGATTATTATCCTGACTGATGCTGATGTGGATGGTGCCCATATCCGAACTCTGCTACTGACATTTTTCTTCAGATATCAGAGAGCTTTGTTTGATGAAGGCTGCATATATGTTGGTGTTCCACCATTGTACAAGGTTGTAAGGGGAAAACAAGTGCACTATTGCTATGATGATGCTGACCTTAAAAAGCTTCAAAGATCATTCCCTCCTAATGCATCATACAACATGCAAAGGTTCAAAGGGTTGGGAGAGATGATGCCTTTACAACTATGGGAAACAACCATGGATCCAGAACGCAGGTTATTGAAGCAATTAAAAGTTGAGGATGCAGCAGAAGCAAATATTGTTTTTTCGTCTCTTATGGGTGCTCGGGTGGATGTTCGGAAGGAACTCATAAAAAATTCTGCAAGCATGATTGATCTTGACCAGCTAGATATTTGA 2175 0.4211 MAHALLIRPPLLRFMASRFLTSSSIHTRFSSFPPSTLSKPRTSFPLRKFWVPCSVPNAVTPRAFMSSISTPEAFQKNENSTAYGSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLLADDSVCITDNGRGIPTDLHPVTNKSALETVLTVLHAGGKFGGVNSGYSVSGGLHGVGLSVVNALSELLEITVWRDGMEYMQTYARGKPVTILKCLVLPDERKDLRGTCVRFWPDKEVFTTAIQFDYNTIAGRIRELAFLNPKLTITLRKEDTDPEKVQYNEYFYAGGLVEYVKWLNTDKKALHDVLSFRKETDGITVDIAFQWCEDAYSDTILGYANSIRTIDGGTHIDAMKASITRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQDYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEECEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILALGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVVRGKQVHYCYDDADLKKLQRSFPPNASYNMQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEANIVFSSLMGARVDVRKELIKNSASMIDLDQLDI 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01877 724 SUPERFAMILY Ribosomal protein S5 domain 2-like 308 478 IPR020568 -
Cca03g01877 724 CDD TopoII_Trans_DNA_gyrase 307 461 - -
Cca03g01877 724 PANTHER DNA GYRASE SUBUNIT B 56 724 - -
Cca03g01877 724 PRINTS DNA topoisomerase II family signature 112 127 - -
Cca03g01877 724 PRINTS DNA topoisomerase II family signature 147 160 - -
Cca03g01877 724 PRINTS DNA topoisomerase II family signature 192 206 - -
Cca03g01877 724 PRINTS DNA topoisomerase II family signature 355 368 - -
Cca03g01877 724 PRINTS DNA topoisomerase II family signature 507 521 - -
Cca03g01877 724 PRINTS DNA topoisomerase II family signature 574 590 - -
Cca03g01877 724 PRINTS DNA topoisomerase II family signature 592 609 - -
Cca03g01877 724 PRINTS DNA topoisomerase II family signature 612 624 - -
Cca03g01877 724 PRINTS DNA topoisomerase II family signature 654 670 - -
Cca03g01877 724 Gene3D - 486 724 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 56 724 - -
Cca03g01877 724 CDD TOPRIM_TopoIIA_GyrB 505 619 IPR034160 -
Cca03g01877 724 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 110 257 IPR003594 -
Cca03g01877 724 Gene3D - 80 306 IPR036890 -
Cca03g01877 724 SMART HKATPase_4 108 258 IPR003594 -
Cca03g01877 724 ProSiteProfiles Toprim domain profile. 505 612 IPR006171 -
Cca03g01877 724 ProSitePatterns DNA topoisomerase II signature. 509 517 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 Gene3D - 307 485 IPR014721 -
Cca03g01877 724 Pfam DNA gyrase B 308 477 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 83 298 IPR036890 -
Cca03g01877 724 TIGRFAM gyrB: DNA gyrase, B subunit 83 723 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Cca03g01877 724 SUPERFAMILY Type II DNA topoisomerase 482 714 IPR013760 GO:0003918|GO:0005524
Cca03g01877 724 Pfam Toprim domain 506 607 IPR006171 -
Cca03g01877 724 PRINTS DNA gyrase subunit B signature 83 93 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 PRINTS DNA gyrase subunit B signature 264 279 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 PRINTS DNA gyrase subunit B signature 279 292 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 PRINTS DNA gyrase subunit B signature 307 329 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 PRINTS DNA gyrase subunit B signature 399 415 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 PRINTS DNA gyrase subunit B signature 447 461 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 PRINTS DNA gyrase subunit B signature 461 481 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 PRINTS DNA gyrase subunit B signature 557 566 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 PRINTS DNA gyrase subunit B signature 675 687 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 PRINTS DNA gyrase subunit B signature 691 707 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 SMART topII5 112 715 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 Pfam DNA gyrase B subunit, carboxyl terminus 650 710 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Cca03g01877 724 CDD HATPase_GyrB-like 113 298 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01877 K02470 - gmx:100807172 1330.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01877 03 38130914 38144415 Cca03g01877 03 38130914 38144415 ECH