Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01874 atgatcgagaagatcgacgtgaacggagacgggtacgtggacatggacgagttcggcgagttgtaccaaacgataatggacgagaaagacgaggaggaggatatgaagGAGGCCTTCAACGTGTTTGATCAAAATGGAGATGGCTTCATCACGGGGGAGGAACTCAGCGAGGTCTTGTGCTCCCTAGGGCTAAAGCATGGCAAAACCGTACAAGATTGCCAAAGCATGATCAAGAAAGTCGATGTTGATGGCGATGGAATGATTAACTACAAAGAGTTTAGGCAAATGATGAAGGCTGGTTCCTTTGCTGCTGCTTCATTAAGTTGA 327 0.3058 MIEKIDVNGDGYVDMDEFGELYQTIMDEKDEEEDMKEAFNVFDQNGDGFITGEELSEVLCSLGLKHGKTVQDCQSMIKKVDVDGDGMINYKEFRQMMKAGSFAAASLS 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01874 108 PRINTS Parvalbumin signature 21 39 - -
Cca03g01874 108 PRINTS Parvalbumin signature 43 59 - -
Cca03g01874 108 PRINTS Parvalbumin signature 80 93 - -
Cca03g01874 108 ProSitePatterns EF-hand calcium-binding domain. 43 55 IPR018247 -
Cca03g01874 108 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 107 - -
Cca03g01874 108 ProSiteProfiles EF-hand calcium-binding domain profile. 1 28 IPR002048 GO:0005509
Cca03g01874 108 Gene3D - 1 60 - -
Cca03g01874 108 ProSiteProfiles EF-hand calcium-binding domain profile. 30 65 IPR002048 GO:0005509
Cca03g01874 108 SUPERFAMILY EF-hand 1 99 IPR011992 -
Cca03g01874 108 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Cca03g01874 108 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Cca03g01874 108 Pfam EF hand 3 21 IPR002048 GO:0005509
Cca03g01874 108 ProSitePatterns EF-hand calcium-binding domain. 6 18 IPR018247 -
Cca03g01874 108 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 107 - -
Cca03g01874 108 Gene3D - 61 102 - -
Cca03g01874 108 Pfam EF-hand domain pair 32 98 IPR002048 GO:0005509
Cca03g01874 108 CDD EFh 38 98 IPR002048 GO:0005509
Cca03g01874 108 SMART efh_1 72 100 IPR002048 GO:0005509
Cca03g01874 108 SMART efh_1 1 25 IPR002048 GO:0005509
Cca03g01874 108 SMART efh_1 34 62 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01874 Cca-Chr3 38109808 38114456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01874 31 99 EF-hand Containing Proteins AT1G05990 43.478 3.71e-12 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01874 K13448 - gmx:100798114 198.364