Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01870 ATGCTTTACTTCCTTATATCTTTTGTCTCATTTCTCATCCTTTCCAAGTCCTTTACCGGTAAGCCTCTCTCATCAGGGGAGGGTGGGACCAAACTAGGGGCAATTGGGTTTTTGGGGAGCCTTTCAAGTTGGTTAATTTCTAGGCTCAGGAAAGGGAGCACAAGCACCCCTTGTAGTTTTTTTCAGTTTTTTCTTGGCATGTCATTGAAAAAGAAGAGTTTGGTGTCTAAGGTGGAGAATGAGGAAGAGGAAGGGAAGGTTTCTCTCTTGGATTTGCCTGATTTGCCATTGGAGTCTATCCTCGAGCACCTTTCACCATCTGAATTATGCAGTGTGGCAAGAGTGTGCACATCTCTGAGGGATAGATGTAGAAGTGATCATTTATGGAAGAAACACATGGAGAGGAAATGGCGTAAGGTGTTTGGTGATGCTGCTTATAGCCAATGGAAATGGCATGTAGCTTCCATGAACAGAGAGAAGATCTCCAACCAGCAAAATCCGAAAGGAATATTTGCTTTCATTCATGGTGGTTTTCTTCCCTTTCTATGGATCAAAGCAAAATCAGAAAAGGCCACAACACAGTCAAGTAGCTCATTACCAGAAGATTCAATCGGGGCACTATATTTTTCTCTTGAGAGTGGCAAATTTTGGTTCCCAGCTCAAGTCTATAACCGTGAGAATGGTCATGCTGGGTTCATGCTCTCATGTTATGATGCTCAACTTTGTTATGACTCGAGATCTGACACTTTTCTGGCAAGGTACTCACCTCATGGGAGATGGACAACTGAGGAAAACATAAAATGGGATCGGTTGAGGGTGCCACCAATTGCCTCTTCTCCACATGCCCTTCATATCTCTGACTGTTTGGATGAATTGAGACCTGGAGATCACATTGAGATCCAGTGGAGAAGAAACAAAGAGTTTCCTTATGGTATGTCTTAA 942 0.431 MLYFLISFVSFLILSKSFTGKPLSSGEGGTKLGAIGFLGSLSSWLISRLRKGSTSTPCSFFQFFLGMSLKKKSLVSKVENEEEEGKVSLLDLPDLPLESILEHLSPSELCSVARVCTSLRDRCRSDHLWKKHMERKWRKVFGDAAYSQWKWHVASMNREKISNQQNPKGIFAFIHGGFLPFLWIKAKSEKATTQSSSSLPEDSIGALYFSLESGKFWFPAQVYNRENGHAGFMLSCYDAQLCYDSRSDTFLARYSPHGRWTTEENIKWDRLRVPPIASSPHALHISDCLDELRPGDHIEIQWRRNKEFPYGMS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01870 313 PANTHER ESTS AU081301(E20138) 1 311 - -
Cca03g01870 313 SMART fbox_2 92 132 IPR001810 GO:0005515
Cca03g01870 313 ProSiteProfiles F-box domain profile. 86 132 IPR001810 GO:0005515
Cca03g01870 313 SUPERFAMILY F-box domain 81 142 IPR036047 GO:0005515
Cca03g01870 313 Pfam F-box domain 89 131 IPR001810 GO:0005515
Cca03g01870 313 PANTHER F-BOX-LIKE PROTEIN 1 311 - -
Cca03g01870 313 Gene3D - 72 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01870 Cca-Chr3 38071514 38075411 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01870 - - gmx:100778469 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01870 03 38071514 38075411 Cca03g01870 03 38071514 38075411 ECH