Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01869 ATGAACGGAGGCCCATCTGGTTTCACAAATGCTCCTGTCACGAGGGCTTTCATCATCGCCTCGGCGCTTTTCACAATCTTTTTTGGGATCCAAGGCCGTTACAACACTCTGGGACTGTCATATCAGGATGTTTTTGGAAAGTTTCGCATTTGGAAGTGGATCATGTCCATATTTTCCTTCTCATCAACACCAGAGTTGATGTTTGGACTGTATCTGCTATATTATTTCAGGGTCTTTGAGAGACAGATAGGTTCCAATAAATACTCGGTCTTTATCGTGTTTTCCATATTAACTTCACTGCTGCTTGAAGTCCTTGCTGTAGCACTTTTAAAAGATCCTACAGCAAACCTTGTCACTCCTGGGCCTTATGGCCTTATATTTGCTTCATTTGTACCCTTTTTCTTTGACATTCCGGTTTCAACACGATTTCGAGTTTTTAGTTTCCTCTTCTCAGACAAGTCGTTCATATATCTAGCTGGTCTTCAGCTTCTTTTGTCATCATGGAAAAGATCCATCTTACCAGGGTTGTGTGGCATCCTTGCTGGTTCCTTGTACCGCTTAAATGTCTTTTACATCCGCAAAGCAAAGTTCCCAGAGTTGATCTCGTCATTCTTTTCACGATTTTCATTGCCATCTATGGGGAGTCCACGTGCAGCACCAGCAAGGAATGTTGTCAGGAATGTACCTTCCTATCCAACTCACCAAATGGAGAGAAACTACCCTGCTCCAATGCAATCTGCAGTAGAACCATCAGAGGACTCAATCACTACCCTCGTTTCTATGGGCTTTGACAGGAATTCTGCCAGACAAGCCCTGGTGCAGGCCAGAAATGATGTCAATGTGGCCACCAACATCCTACTGGAGGCACAGTCTCACTAA 879 0.4403 MNGGPSGFTNAPVTRAFIIASALFTIFFGIQGRYNTLGLSYQDVFGKFRIWKWIMSIFSFSSTPELMFGLYLLYYFRVFERQIGSNKYSVFIVFSILTSLLLEVLAVALLKDPTANLVTPGPYGLIFASFVPFFFDIPVSTRFRVFSFLFSDKSFIYLAGLQLLLSSWKRSILPGLCGILAGSLYRLNVFYIRKAKFPELISSFFSRFSLPSMGSPRAAPARNVVRNVPSYPTHQMERNYPAPMQSAVEPSEDSITTLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01869 292 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 249 289 IPR015940 -
Cca03g01869 292 Pfam UBA/TS-N domain 251 286 IPR015940 -
Cca03g01869 292 Gene3D - 220 291 - -
Cca03g01869 292 SUPERFAMILY UBA-like 244 289 IPR009060 GO:0005515
Cca03g01869 292 Gene3D - 9 188 IPR035952 -
Cca03g01869 292 SUPERFAMILY Rhomboid-like 11 187 IPR035952 -
Cca03g01869 292 Pfam Rhomboid family 48 189 IPR022764 GO:0004252|GO:0016021
Cca03g01869 292 SMART uba_6 251 288 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01869 Cca-Chr3 38054664 38064486 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01869 K25216 - gmx:100777938 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01869 03 38054664 38064486 Cca03g01869 03 38054664 38064486 ECH