Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01862 ATGGCTATGCATAAGATTTTGCAAAGGGGTCGATTCTCGAACCGTCCTCCGCAACTGATTATTGGTTCTGCTGCTTCTCACACATTTCCTGCTTCTGGGGCTGAATCTCTTCATGTTCGGGAAATTTCAAACAAAGAAGTTTGGAATGCATTTGACAAGTATGATATAAAAGGTTTGTCTAAATGCCTGAACTGGATTTCAAGGCTAAATGGCAATAATCATGCTGCCTCCTATGTTGTAAATCGTCATTTTACATCTGATCGCAATGATAGATACACACAGGAGTTCTCAAGTAAGCTTCTCAAACATATTCCAGACTATGTAAAGATAGTGGAGGTTGGTCCAAGGGATGGATTGCAAAATGAGAAGGCTATTATTCCTACTGATGTAAAAGTTGGGTTGATAAAACTGCTGGTTTCTTCTGGGTTGCTTGTGGTTGAGGCAACTAGTTTTGTCTCACCAAAATGGGTACCACAGTTGGCAGATGCAACTGATGTATTGGCAGCAATTCAAAATGTTGAAGGTGCTAGGTTTCCTGTCTTGACTCCAAACCTCAAAGGTTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTTAATAGTGGCATTGAGGATAATCTTGCTCGTTGCCGTGATATTGCTTCAGCTGCTAGATCCCTCTCGATCCCAGTCCGCGGATATATATCATGTGTTGTGGGATGTCCTCTGGAAGGAAGTATTGCTCCAGCGAAAGTAGCATATGTGGCAAAATCACTTCATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATTGGTGTTGGCACACCTGGTACTGTCATTCCGATGCTCGAAGCTGTTCTGGGTGTTGTTCCAGATGACATGCTTGCTGTCCACTTTCATGATACTTACGGTCAGGCGCTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCCGTGTCTGGTCTTGGGGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTTGCCACTGAGGATGTGGTTTACATGCTGAATGGACTTGGAGTGAAAACCAATGTTGACCTTGGAAAGCTTATGTTGGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGTATCTGGTTCAAAAGCAGCAACTGCCTTGAGTAAAGTTACAACTCATGCCTCCAAACTATGA 1224 0.4346 MAMHKILQRGRFSNRPPQLIIGSAASHTFPASGAESLHVREISNKEVWNAFDKYDIKGLSKCLNWISRLNGNNHAASYVVNRHFTSDRNDRYTQEFSSKLLKHIPDYVKIVEVGPRDGLQNEKAIIPTDVKVGLIKLLVSSGLLVVEATSFVSPKWVPQLADATDVLAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAVFPAASESFSKANLNSGIEDNLARCRDIASAARSLSIPVRGYISCVVGCPLEGSIAPAKVAYVAKSLHEMGCSEISLGDTIGVGTPGTVIPMLEAVLGVVPDDMLAVHFHDTYGQALSNILISLQMGISTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFICKHLGRVSGSKAATALSKVTTHASKL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01862 407 SUPERFAMILY Aldolase 103 403 - -
Cca03g01862 407 Gene3D Aldolase class I 101 400 IPR013785 -
Cca03g01862 407 PANTHER HYDROXYMETHYLGLUTARYL-COA LYASE 43 407 - -
Cca03g01862 407 Pfam HMGL-like 108 380 IPR000891 GO:0003824
Cca03g01862 407 CDD DRE_TIM_HMGL 110 383 - -
Cca03g01862 407 PANTHER HYDROXYMETHYLGLUTARYL-COA LYASE 43 407 IPR043594 GO:0016833
Cca03g01862 407 ProSiteProfiles Pyruvate carboxyltransferase domain. 108 375 IPR000891 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01862 Cca-Chr3 37947542 37954583 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01862 K01640 - gmx:100801507 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01862 03 37947542 37954583 Cca03g01862 03 37947542 37954583 ECH