Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01860 ATGACCATGACCATGTTACCACATTCATTTACTATGATTGCAACAATAATTATTGCTCTTGCACAAACACTTGTAGGGGTGAGTTCACTTCCTGAAGCTGATAAAATAAGCAATTTGCCGGGGCAGCCAAAGGTCAAATTTCAGCAATATTCAGGTTACATTACTGTGGATGACCAACATCAGAGAGCTTTGTTTTATTACTTTGTTCAAGCAGAAAAACACCCTACTTCCAAGCCATTAGTCCTTTGGTTGAACGGAGGTCCTGGTTGTTCATCCATTGGCGTTGGAGCTTTAGTTGAACATGGCCCTTTCAAACCGGGTGACAATAATGTTCTTGTGAAAAATCATTATAGTTGGAACAAAGTGGCAAATGTGCTATACTTGGAATCACCGGCTGGTGTTGGATTCTCCTACTCTAGCAATACATCTTTCTATACCTTAGTGACAGATGAAATTACAGCTAGGGATAATCTTGTTTTCCTGCAGCGCTGGTTCACCGAATTCCCTGAGTACTCAAATAACGACTTCTTCATTACAGGGGAGAGCTACGCAGGTCACTATGTTCCACAACTTGCACAACTTATTGTTCAATCCAAGGCCAACTTCAATCTCAAAGGGATAGCAATAGGGAATCCTCTTATGGAATTTGATACTGACTTGAACTCCAAAGCTGAATTCTTTTGGTCACACGGACTTATTTCAGATTCAACTTATGATCTCTTTACCAGAGTTTGCAACTACTCTACAATTAGGAGACAAATGATACATGGGAATGTTAGTGACATTTGTGCAAATATAACTAAACTGGTTTTTACTGAGGTTAGCGACTATGTAGACCAATATGATGTCACTCTAGATGTGTGTTTGTCGTCGGCAAATCAACAGTCCTATGTGCTGAATCAAATGCAAGAGACACGTAAGATAGATGTTTGTGTGGACGACAAAGCAATCACATACTTAAACAGAAAAGATGTGCAGCAAGCTCTCCATGCCAAGCTTGTTGGAGTCTCCAACTGGTCAACTTGCAGCAGGGTTCTCCATTATGACCGTCGGAATCTAGAGGTACCAACAATTTCTATTCTTGGGTCACTTGTTAATTCCAGCATCAGGGTTCTGGTATACAGTGGAGATCAAGATTCAGTTATTCCATTGCTGGGAACGCGATCTTTGGTGAATGGATTAGCTAAGGAACTTGGACTGAATACAACAGTGGCCTATAGAGCCTGGTTTGAAGGAAAACAGGTAGCAGGATGGACACAAGTATATGGGGATATCTTATCATATGCCACCATTAGAGGAGCATCTCATGAAGCTCCCTTTACTCAACCACAGAGATCACTCGGGCTACTTAAAGCCTTTTTGGAAGGAAAGCCATTACCAAGTATTGTATAA 1392 0.4102 MTMTMLPHSFTMIATIIIALAQTLVGVSSLPEADKISNLPGQPKVKFQQYSGYITVDDQHQRALFYYFVQAEKHPTSKPLVLWLNGGPGCSSIGVGALVEHGPFKPGDNNVLVKNHYSWNKVANVLYLESPAGVGFSYSSNTSFYTLVTDEITARDNLVFLQRWFTEFPEYSNNDFFITGESYAGHYVPQLAQLIVQSKANFNLKGIAIGNPLMEFDTDLNSKAEFFWSHGLISDSTYDLFTRVCNYSTIRRQMIHGNVSDICANITKLVFTEVSDYVDQYDVTLDVCLSSANQQSYVLNQMQETRKIDVCVDDKAITYLNRKDVQQALHAKLVGVSNWSTCSRVLHYDRRNLEVPTISILGSLVNSSIRVLVYSGDQDSVIPLLGTRSLVNGLAKELGLNTTVAYRAWFEGKQVAGWTQVYGDILSYATIRGASHEAPFTQPQRSLGLLKAFLEGKPLPSIV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01860 463 Gene3D - 311 347 - -
Cca03g01860 463 PANTHER CARBOXYPEPTIDASE 10 461 - -
Cca03g01860 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 461 IPR001563 GO:0004185|GO:0006508
Cca03g01860 463 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Cca03g01860 463 Gene3D - 358 456 - -
Cca03g01860 463 Pfam Serine carboxypeptidase 41 456 IPR001563 GO:0004185|GO:0006508
Cca03g01860 463 ProSitePatterns Serine carboxypeptidases, histidine active site. 426 443 IPR033124 GO:0004185
Cca03g01860 463 Gene3D alpha/beta hydrolase 31 290 IPR029058 -
Cca03g01860 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Cca03g01860 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Cca03g01860 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Cca03g01860 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 426 439 IPR001563 GO:0004185|GO:0006508
Cca03g01860 463 SUPERFAMILY alpha/beta-Hydrolases 37 460 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01860 Cca-Chr3 37914251 37916775 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01860 316 459 Calmodulin-binding Proteins AT2G22960 30.612 3.79e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01860 K16297 - gmx:100793889 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01860 03 37914251 37916775 Cca02g01993 02 39662111 39666866 ECH
Cca03g01860 03 37914251 37916775 Cca03g01860 03 37914251 37916775 ECH