Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01993 ATGTGGCGTAACTGCATGCGGCCtcttctccttcttctccttctccttcccttctccGGCGCCGTCGACATCGACGATGTTCGATTCGATTTTCCGGCGAAGAAGCTCATCAGTGAACTTAACCTTTTTCCTCCCGAAGATGTCAACATCGTTAGCCACCCCTATTCTGATGCCAACAAGATCGTCGAGAAACCGCTTAGGTTCCCAAACTTTGTGGATTCACAGTCTGGGATTTCCATCGACGACTTGGCTCACCGTGCTGGCTATTACCCTATTACTCATTCTCATGCTGCTCGGATGTTCTACTTTTTCTTTGAATCACGGAACAGCAAGAAGGATCCTGTTGTGATTTGGTTGACTGGGGGGCCTGGCTGTAGCAGTGAATTGGCTGTGTTTTATGAGAATGGCCCTTTCAAAATTGCTGACAACATGTCCCTTGTGTGGAATGATTATGGTTGGGACAAGGTTTCTAACCTTCTGTATGTTGACCAACCAACTGGAACTGGATTTAGTTACAGTACTGACAAGCGTGACATTCGTCATGATGAAGAAGGTGTCAGCAATGACCTGTATGACTTTTTACAGGCCTTCTTTGCTGAACATCCTGAGTATGCAGAGAATGACTTTTTTATTACGGGTGAATCATATGCTGGACATTATATTCCAGCTGTTGCAGCTCGCATCCATAGGGGAAACAAAGATAAAGAGGGAATTCATATAAACTTAAAGGGATTTGCCATTGGTAATGGTCTTACAGATCCTGGGATTCAGTATAAAGCTTATACAGATTATGCACTGGAAATGGACATAATTCAGCAGGCTGACTATGATCAACTCAACAAAGTGATGGTTCCAGCCTGTGAAATAGCAATAAAATTATGCGGCACTGGTGGAAAAGTCGCATGCATGGCTTCATACTTTGTTTGTAATACCATCTTCAATTCCATCATGTCACATGCTGGCAATATCAATTATTATGACATCAGAAAGAAGTGTGAGGGGAGCCTTTGCTATGATTTTTCAAAAATGGAGAAATTCTTGAACCAAGAATCTGTTCGGGATGCACTAGGGGTTGGAGATATTGCTTTTGTATCTTGTAGTTCTACAGTTTATCAGGCTATGCTGGTGGATTGGATGAGGAATCTTGAAGTTGGTATTCCTGCCCTTCTTGAAGATGGAATCAATTTGCTTGTGTATGCTGGAGAATATGATCTCATCTGCAACTGGCTTGGTAATTCAAAATGGGTTCATGCCATGGAGTGGTCTGGTCATGAAGAATTTGTGGCCTCATCCGAAGTGCCTTTCACAGTTGATGACGCTGAAGCTGGAGTATTGAAGAATTACGGACCTTTAAGTTTCCTTAAGGTCCATAATGCAGGTCACATGGTTCCAATGGATCAGCCAAAGGCTTCGTTAGAAATGCTGAAGAGGTGGATTCAGGGAACCCTGTCACGATCTGGTGGTGATGCCGAGAAATTGGTTGCTGAGCTGTAA 1494 0.4237 MWRNCMRPLLLLLLLLPFSGAVDIDDVRFDFPAKKLISELNLFPPEDVNIVSHPYSDANKIVEKPLRFPNFVDSQSGISIDDLAHRAGYYPITHSHAARMFYFFFESRNSKKDPVVIWLTGGPGCSSELAVFYENGPFKIADNMSLVWNDYGWDKVSNLLYVDQPTGTGFSYSTDKRDIRHDEEGVSNDLYDFLQAFFAEHPEYAENDFFITGESYAGHYIPAVAARIHRGNKDKEGIHINLKGFAIGNGLTDPGIQYKAYTDYALEMDIIQQADYDQLNKVMVPACEIAIKLCGTGGKVACMASYFVCNTIFNSIMSHAGNINYYDIRKKCEGSLCYDFSKMEKFLNQESVRDALGVGDIAFVSCSSTVYQAMLVDWMRNLEVGIPALLEDGINLLVYAGEYDLICNWLGNSKWVHAMEWSGHEEFVASSEVPFTVDDAEAGVLKNYGPLSFLKVHNAGHMVPMDQPKASLEMLKRWIQGTLSRSGGDAEKLVAEL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01993 497 ProSitePatterns Serine carboxypeptidases, serine active site. 211 218 IPR018202 GO:0004185
Cca02g01993 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 22 486 IPR001563 GO:0004185|GO:0006508
Cca02g01993 497 Pfam Serine carboxypeptidase 83 481 IPR001563 GO:0004185|GO:0006508
Cca02g01993 497 Gene3D alpha/beta hydrolase 71 492 IPR029058 -
Cca02g01993 497 SUPERFAMILY alpha/beta-Hydrolases 84 482 IPR029058 -
Cca02g01993 497 PANTHER CARBOXYPEPTIDASE 22 486 - -
Cca02g01993 497 ProSitePatterns Serine carboxypeptidases, histidine active site. 451 468 IPR033124 GO:0004185
Cca02g01993 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 149 161 IPR001563 GO:0004185|GO:0006508
Cca02g01993 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 172 IPR001563 GO:0004185|GO:0006508
Cca02g01993 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 197 222 IPR001563 GO:0004185|GO:0006508
Cca02g01993 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 451 464 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01993 Cca-Chr2 39662111 39666866 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01993 K16298 - gmx:100805730 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01860 03 37914251 37916775 Cca02g01993 02 39662111 39666866 ECH
Cca02g01993 02 39662111 39666866 Cca02g01993 02 39662111 39666866 ECH