Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01856 ATGTTTGACCGGGCGTGGATGTTGATAATAATGACGACGGTTGCAACTTCAGTGCTCATGGTTAGGTCATTTCCCGAAGCTGATAAGGTAAAATCCTTGCCCGGCCAGTCAGATGTTTCCTTCCAACAATTTGCTGGCTATGTAGCAGTGGATGACAATAATAACAGAGCTCTCTTCTACTATTTTGTTGAAGCACAAACCAACCCTGCTTCCAAGCCTCTAGTTCTCTGGCTAAATGGAGGGCTGGGCTGTTCATCCGTTGGAGTTGGAGCCTTCACCGAACATGGTCCTTTTCTTACAAATCAAGGACAGGCTATCGTTCAAAACCAGTATAGCTGGAACAAAGTGGCAAACATTTTGTACGTTGAGTCACCGGCAGGTGCTGGATTCTCTTACTCTCTCAATTTGTCGTTTTATAAAACAGTGAACGATAAGGTCACAGCCCGAGACAGTCTGGTTTTCCTGCAGCGCTGGTTTGCCAAGTTCCCAGAATACACAAATAGAGATTTCTATATAACAGGAGAGAGTTATGCAGGTCACTATGTTCCTCAACTTGCTGAACTCATTGTTAAGAGTAAAGTGAATTTCAATCTAAGGGGCATAGCACTAGGAAACCCCCTTCTGGATTTGGACACTGATATGAATGCAGTTGATGAATATTACTGGTCTCATGGAATTATTAGCGATTATGCTTACAAAATCAGTACCTCTCTATGTAACTCGTCAAGAAGATATAGAGAAAACTTTAGTGGCCATCATTCTACTGATTGTCTTGTTGCAGCTCAAAAAGTATCGGAAGAATATTCTTCTACACTTCTCATTGACAAATATTATGTCATTGGTGACAGATGTCTTTCATACAATCTTTCTCAGGCAAGTTTTCTTAGTGAAATGCTAAATTTAGGAACGTTTCGCCTTAGGAAGTCGTCCCATAATGTGCAGCAAATTGAAGATCCTACTGACCAGATGAAGCAGCCAATTGATGAGTGTAATCTGAAATATTCAGAGATGTACTTGAACAGAAAAGATGTGCAGAAAGCCCTCCATGCTCGCCTGGTGGGAACTACCGATTATCGTTTGTGCAACAAGATTTTACAAACAAATTATGAGCGATCGGACATAGAGATCCCAACAACTGATGTTATAGGCTTCCTTGTAAAATCAGGTCTTCGAGTCACGGTTTACAGGTGA 1191 0.4148 MFDRAWMLIIMTTVATSVLMVRSFPEADKVKSLPGQSDVSFQQFAGYVAVDDNNNRALFYYFVEAQTNPASKPLVLWLNGGLGCSSVGVGAFTEHGPFLTNQGQAIVQNQYSWNKVANILYVESPAGAGFSYSLNLSFYKTVNDKVTARDSLVFLQRWFAKFPEYTNRDFYITGESYAGHYVPQLAELIVKSKVNFNLRGIALGNPLLDLDTDMNAVDEYYWSHGIISDYAYKISTSLCNSSRRYRENFSGHHSTDCLVAAQKVSEEYSSTLLIDKYYVIGDRCLSYNLSQASFLSEMLNLGTFRLRKSSHNVQQIEDPTDQMKQPIDECNLKYSEMYLNRKDVQKALHARLVGTTDYRLCNKILQTNYERSDIEIPTTDVIGFLVKSGLRVTVYR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01856 396 SUPERFAMILY alpha/beta-Hydrolases 26 395 IPR029058 -
Cca03g01856 396 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
Cca03g01856 396 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 395 IPR001563 GO:0004185|GO:0006508
Cca03g01856 396 PANTHER CARBOXYPEPTIDASE 9 395 - -
Cca03g01856 396 Pfam Serine carboxypeptidase 34 395 IPR001563 GO:0004185|GO:0006508
Cca03g01856 396 Gene3D - 330 367 - -
Cca03g01856 396 Gene3D alpha/beta hydrolase 23 305 IPR029058 -
Cca03g01856 396 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Cca03g01856 396 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Cca03g01856 396 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01856 Cca-Chr3 37878416 37883559 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01856 K16297 - gmx:100819443 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01856 03 37878416 37883559 Cca03g01856 03 37878416 37883559 ECH