Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01854 ATGCACGtcttctcactcttcctctttctcctcttcttcTCAACTTCATTTGCAGCCACAGATACAGTCCCAGAGGGTTCCTCACTCTCCGTAGAGAAACCCAGCGACACCCTCATTTCATCCAACGGCGACTTCTCCGCCGGCTTCATTCAAGTCGGGGACAACGCCTTCTGCTTTGCCGTCTGCTTCACGCGCTCCAATCCACCCACCGTTTTATGGATGGCCAACCGCGACGTCCCCGTCAACGGCAAAGCCTCGCGCCTCTCGCTCTGGAAAAACGGCAACCTCGTTTTAACCGACGCAGGAGAAACCATTGTATGGACAACCGCCACCGTCTCCTCCTCCAACCTACACCTTAAGCTAAGAAACGACGGCAACCTCCTTCTCCTCACTTCAAAACACACAGTCGTTTGGCAAAGCTTCGATTCCCCAACCGACACCCTTCTCCCCGACCAAAAACTCACGGAGAGAGCAAGCCTGGTTTCTTCGAGAAGCGCAACCAACTTTTCCTCCGGTTTCTACAAGCTTTACTTCGACAACGACAACGTTCTTCGTTTACTCTACAAGGGCCCCACCTTGTCCAGCGTCTACTGGCCAGAATCGTGGCGGTTACCAATCGACGCAGGCAGATCCACCTACAACGTAACCAAAACCGCTCTGTTAGATTCCTTTGGACGCTTCTCCTCCTCCGATGGCTTTCACTTCCGCTCCACCGATTACCCAAACAAACTCTATAGAAGACTCAAGATGGATCCTGATGGTAACTTGCGTTTGTACAGCTTCAACCAGGAGACCAAGACGTGGCAGGTGACGTGGCAGGTTATTCCCCAACCCTGCACCGTTCATGGAATATGCGGTGCTAACAGCATGTGCAGTAACCATCATGTCACTGGAAGGACGTGCCATTGCTTGAAAGGGTTTAGGGTTAAGGATCCTAATGATTGGACTCAGGGTTGCGTGCCTCACTTTGACCCTTCTCTATTTTCTTGCCAGAGTCCTCAGCCTATGGCTTTTCTTCATCTTCCAACCACGGAATCCTACGGCTATGACTTGAACGTCACTCGCGTTACCAGCTTGAAGGAGTGCCAGGATTTGTGCCTGCGCCTTTGTGATAAATGCAAAGGGGTTCAGTTCAAGTTCAACGAGGTTTCTACTTACAACTGCTACCCCAAAACGATGGTGTTCAATGGACGGGATCCCCCCAACTTCGACGGAGAGTTCTATCTGAAATTGCCCAAAGCGGTTTTGCAATCTTCCGGGGACCCTCTTAAGTATTCCCCGATCAAGTGTTCGGCTGGTTTGTCTCAGCCGTTGAAGAGGTTTTATCAAACGCCTGGGAAAAACTCCACGTTGAGTTTCTTGGTTTGGTTCGCTTTGGGGATAGGGGCGTTTGAGTTGTCCACTATTTTCCTGGTGTGGTTCTTCTTGTTGAGAAGTAGCAAGAACCCTGAGGCGGTGGAACAACAGAAACACCTTCTTTCGGCCACGGGGTTTCAAAGGTTCACGTACGCAGAGCTGAAAAGCGCGACGAAAGGGTTCAGGGAAGAGGTTGGGAGAGGAGCGGGTGGGGTTGTTTACAAAGGAACctatgggattgtggtgttggaaatggtgagtggaaggagTCCAATGGAAATGCAGAGCCTTGAGAACAGTAGGGGCATAGAGCAGCGACGGTTGGTGACGTGGGTAACGGAGAAGATAAAGCATGCACCGACGAGTGCATTTTGGATTGAGGAGATAATTGATCCCAACTTGGAAGGCGAATACAACGTTTCAGAAGTGGAGATTTTGGTGAAAGTGGCTTTGCAGTGTGTGCAAGATGACATGAATCAAAGACCGTCCCTGAGCCAGGTCGCCGAGATGCTTCTCTCTCATCAAAACAAACTCCTCCCTCGTTAG 1902 0.4895 MHVFSLFLFLLFFSTSFAATDTVPEGSSLSVEKPSDTLISSNGDFSAGFIQVGDNAFCFAVCFTRSNPPTVLWMANRDVPVNGKASRLSLWKNGNLVLTDAGETIVWTTATVSSSNLHLKLRNDGNLLLLTSKHTVVWQSFDSPTDTLLPDQKLTERASLVSSRSATNFSSGFYKLYFDNDNVLRLLYKGPTLSSVYWPESWRLPIDAGRSTYNVTKTALLDSFGRFSSSDGFHFRSTDYPNKLYRRLKMDPDGNLRLYSFNQETKTWQVTWQVIPQPCTVHGICGANSMCSNHHVTGRTCHCLKGFRVKDPNDWTQGCVPHFDPSLFSCQSPQPMAFLHLPTTESYGYDLNVTRVTSLKECQDLCLRLCDKCKGVQFKFNEVSTYNCYPKTMVFNGRDPPNFDGEFYLKLPKAVLQSSGDPLKYSPIKCSAGLSQPLKRFYQTPGKNSTLSFLVWFALGIGAFELSTIFLVWFFLLRSSKNPEAVEQQKHLLSATGFQRFTYAELKSATKGFREEVGRGAGGVVYKGTYGIVVLEMVSGRSPMEMQSLENSRGIEQRRLVTWVTEKIKHAPTSAFWIEEIIDPNLEGEYNVSEVEILVKVALQCVQDDMNQRPSLSQVAEMLLSHQNKLLPR 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01854 633 CDD PAN_AP_plant 329 412 - -
Cca03g01854 633 Gene3D - 144 287 - -
Cca03g01854 633 Gene3D Transferase(Phosphotransferase) domain 1 529 630 - -
Cca03g01854 633 ProSiteProfiles PAN/Apple domain profile. 330 412 IPR003609 -
Cca03g01854 633 PANTHER OS07G0415500 PROTEIN 529 628 - -
Cca03g01854 633 Gene3D - 14 143 IPR036426 -
Cca03g01854 633 CDD B_lectin 37 144 IPR001480 -
Cca03g01854 633 ProSiteProfiles Bulb-type lectin domain profile. 14 142 IPR001480 -
Cca03g01854 633 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 529 628 - -
Cca03g01854 633 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 5 528 - -
Cca03g01854 633 SMART blect_4 29 144 IPR001480 -
Cca03g01854 633 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 199 IPR036426 -
Cca03g01854 633 Pfam D-mannose binding lectin 70 157 IPR001480 -
Cca03g01854 633 PANTHER OS07G0415500 PROTEIN 5 528 - -
Cca03g01854 633 Pfam S-locus glycoprotein domain 241 310 IPR000858 GO:0048544
Cca03g01854 633 SUPERFAMILY Protein kinase-like (PK-like) 530 624 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01854 Cca-Chr3 37863287 37865695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01854 530 623 Receptor kinase-like Gene Family AT1G34210 34.043 1.48e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01854 - - gmx:100816469 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01854 03 37863287 37865695 Cca03g01854 03 37863287 37865695 ECH