Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01853 ATGGCTGTAAATGTAATACTCATCTTCCTCTATCTTATTTGGTCTCCATCTTCAGCGGTGGATACCATGCGACAAGGGTCATCCCTCTCAGTGGAGGACCCAAACGACATCATGCTCTCACCAAACGGCATCTTCTCTGCGGGCTTCTATGCCGTTGGTGAAAACGCATATGCCTTGGCCGTTTGGTTCTCCCAAGCCGACGTCCAAAACGCGACCGCCGTGTGGATGGCAAACCGTGAGCAGCCCGTAAACGGCAGGGGCTCAAAGCTTTCGCTGCTCCAAAACGGGAATCTCGCCCTGAGCGACGCTGACGAGTCCCACGTATGGTCCACAAACACCGTTTCGCTCTCCTCCTCTCTGCGTCTATCTCTCCACAACACTGGGAACCTCGTTCTCAGCGAAACGAAGGGCGGCGGTGTCGTTTTGTGGCAAAGCTTTGATTTCCCAACGGATACGCTTCTGCCTCAGCAAGTGTTCACGAGGCACGCGAAACTCGTTTCTTCTCGAAGCGATAGCAACAGCTCCTCCGGCTTCTACTCCTTCTTCTTCGACAACGACAACATTCTTCGTCTTCTCTACGACGGCCCCGAAGTCTCTGGCCTTTACTGGCCCGATCCATGGTTGCTCACTTGGAACGCCAAAAGGTCCACTTACAACAACACCAGACTCGCCGTCATGGACACGCTCGGCAACTTCAGTTCTTCCGATGATTTCACTTTCACCACTTCCGATTACGGCGCCGTCATGCAGAGAAGATTCACCCTGGATCACGATGGAAACCTTCGTGTTTATAGTCGCAGACGCGGTGGAGACAAATGGTCCATTACGTGGCAAGCCAAAGCAAGACCCTGTAACATTCATGGTATTTGTGGCCCTAATAGTTTCTGCTCTTACAATCAAAATTCTAGTGTCAAGTGCTCTTGCCTTCCCGGGTATAAGTGGAAGGATGATCGTGATTGGTCTTATGGCTGCCAACCCGAATTCTCTACTTCTTGCACTGGAAACCACTCTCGCTTTTTGCGTATAAGTAACGTGGAGTTGTATGGCTATGACTATGGGATCATGCAAAATTACACGCTCCGTCAGTGTCTGGAGTTATGCCTTCAATTATGCAACTGCGGAGGAGTCCAGTATACCTATGTCTATGACACTGGCACTTATACCTGTTACCCCAAGTTGCAGTTGCGGAATGCGTATCGTACAGCGTATTTTAATGCTGATTTGTACTTGAAACTCCCATCAAACAGTACTTATTCTTACGAGGGGTCCCTAAGTGAGCATGGTCTTGATTGTTCTTCCAGTTTGAGAACGGTTCTGCTTGAGAGAGCTTATGACATGGGTCATGGAAGCAGATATGTGAAGTTCTTGGTTTGGTTTGTAGGGGGAGTGGGAGGGCTTCAAGTTTCGTCTATATTGGTGATTTGGCTTTTTCTGGTGAGAACACGGGGGAAGCAATATTCTGGTGTAGATGGACGACTCTATAATCTGGCCATGACCGGTTTTAGGAAATTCAGTTATTCTGAGGTGAAACAAGCCACGAGAGGGTTTAGGGAAGAGATAGGAAGGGGTGCAGGAGGGTTTGTGTACAAAGGTGTGTTGTTGGATCAACGAGTTGCAgcagtgaagcgactcaaggatgctaatcaaggagaagaagagtttctcgcagaaagCGTAGCAAAGGATGTTGTTATCAGTGATGATAAGGGTGTGGAGAAGCGGAATCTGAACCTGGTTGCGTGGCTTAAAGAGAAACAGAAAATGGGAAGTGGGTGGGTTAATGAAATCTTAGACCCCACGGTAGAAGGAGTATATGAGGAGGGTAAGATGGAAGCTTTGGGCAAAGTGGCTTTGCAATGCGTGGAGGAAGAGAAAGACAAGAGGCCCACCATGAGCCAAGTAGTGGAGATACTTCAGAAATCTAGCCACCAAAATGATAATCAGTGA 1947 0.4725 MAVNVILIFLYLIWSPSSAVDTMRQGSSLSVEDPNDIMLSPNGIFSAGFYAVGENAYALAVWFSQADVQNATAVWMANREQPVNGRGSKLSLLQNGNLALSDADESHVWSTNTVSLSSSLRLSLHNTGNLVLSETKGGGVVLWQSFDFPTDTLLPQQVFTRHAKLVSSRSDSNSSSGFYSFFFDNDNILRLLYDGPEVSGLYWPDPWLLTWNAKRSTYNNTRLAVMDTLGNFSSSDDFTFTTSDYGAVMQRRFTLDHDGNLRVYSRRRGGDKWSITWQAKARPCNIHGICGPNSFCSYNQNSSVKCSCLPGYKWKDDRDWSYGCQPEFSTSCTGNHSRFLRISNVELYGYDYGIMQNYTLRQCLELCLQLCNCGGVQYTYVYDTGTYTCYPKLQLRNAYRTAYFNADLYLKLPSNSTYSYEGSLSEHGLDCSSSLRTVLLERAYDMGHGSRYVKFLVWFVGGVGGLQVSSILVIWLFLVRTRGKQYSGVDGRLYNLAMTGFRKFSYSEVKQATRGFREEIGRGAGGFVYKGVLLDQRVAAVKRLKDANQGEEEFLAESVAKDVVISDDKGVEKRNLNLVAWLKEKQKMGSGWVNEILDPTVEGVYEEGKMEALGKVALQCVEEEKDKRPTMSQVVEILQKSSHQNDNQ 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01853 648 CDD PAN_AP_plant 331 413 - -
Cca03g01853 648 ProSiteProfiles PAN/Apple domain profile. 332 413 IPR003609 -
Cca03g01853 648 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 204 IPR036426 -
Cca03g01853 648 SMART blect_4 28 149 IPR001480 -
Cca03g01853 648 SMART ntp_6 334 412 IPR003609 -
Cca03g01853 648 SUPERFAMILY Protein kinase-like (PK-like) 494 559 IPR011009 -
Cca03g01853 648 Gene3D Transferase(Phosphotransferase) domain 1 564 648 - -
Cca03g01853 648 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 565 642 - -
Cca03g01853 648 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 3 558 - -
Cca03g01853 648 Pfam S-locus glycoprotein domain 230 314 IPR000858 GO:0048544
Cca03g01853 648 ProSiteProfiles Bulb-type lectin domain profile. 20 145 IPR001480 -
Cca03g01853 648 ProSitePatterns Protein kinases ATP-binding region signature. 520 542 IPR017441 GO:0005524
Cca03g01853 648 Gene3D - 149 274 IPR036426 -
Cca03g01853 648 Gene3D - 17 147 IPR036426 -
Cca03g01853 648 CDD EGF 283 312 - -
Cca03g01853 648 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 565 642 - -
Cca03g01853 648 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 558 - -
Cca03g01853 648 Pfam D-mannose binding lectin 72 163 IPR001480 -
Cca03g01853 648 Gene3D Phosphorylase Kinase; domain 1 484 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01853 Cca-Chr3 37856319 37858724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01853 497 557 Receptor kinase-like Gene Family AT1G66980 45.902 7.87e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01853 - - gmx:100792388 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01853 03 37856319 37858724 Cca03g01853 03 37856319 37858724 ECH