Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01852 atGGAGATTTCCAAGACAAGCACAGAGAATTCCAATAGCAGCAGCAGCACGCAGTCTGAAACTGACAATCATAGCTCCGTTGCTCCCTACGTCGAGGGAGAGAAGGTCTTAGCCAACCACAATCAATGCCTTTATGAAGCCAAGGTTAGGAAAGTTGAACACAACCGTAAAGCATGGCTCTTCCATGTTCATTATCTCGGTTGGAAGAAAAGTTGGGATGAATGGGTTGGCATGGATCGTTTGATGAAACACACTGAGGAGAATATGCGCAAGAAACATGCCCTTGACGAGAAACATGGCAATGAAAAGAATGCTAAAGTCCCGCGTGGCTCTCAGGCTAAATCCAAGACTACTTACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCACCAAGGCAAAACCTGGGGTTGATCCTGAGAAGCTTGTCAACATTCAAATTCCTACAACACTAAAAAAAAAATTAGTTGATGATTGTGAGTTTATTACACATCTGGGCAAGCTTGTTAAACTTCCTCGTACTCCTAATGTGAATGACATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCGATGGCTGGTTCAGTTGAAGAAATTATGAAAGGAGTGTGTTGTTACTTTGACAAAGCACTGCCAGTGATACTCTTGTACAATAACGAGCGCCAACAGTACCAAGAGGCTTGTCCAGCCAATGTCTCTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTTTTTGTTAAGTTGCCCGAGTTATTGTTTTACGCTAGCATTGAAGAGGAGACATTGATAGAACTACAGGCACACTTTCTTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCGCATTTTTCCTTTCTACTTATCATGTTGCAGAAGATATTGAGAACAGCACCAACAAACAAGGTCACTAG 930 0.4161 MEISKTSTENSNSSSSTQSETDNHSSVAPYVEGEKVLANHNQCLYEAKVRKVEHNRKAWLFHVHYLGWKKSWDEWVGMDRLMKHTEENMRKKHALDEKHGNEKNAKVPRGSQAKSKTTYVSRGRKRRNESVTKAKPGVDPEKLVNIQIPTTLKKKLVDDCEFITHLGKLVKLPRTPNVNDILKNYFDYRLKKCGSMAGSVEEIMKGVCCYFDKALPVILLYNNERQQYQEACPANVSPSAIYGAEHLLRLFVKLPELLFYASIEEETLIELQAHFLDFLRFLQKNQSAFFLSTYHVAEDIENSTNKQGH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01852 309 Gene3D - 12 111 - -
Cca03g01852 309 PANTHER CHROMATIN-BINDING PROTEIN 5 308 - -
Cca03g01852 309 Gene3D MRG domain 139 307 IPR038217 -
Cca03g01852 309 Pfam MRG 126 294 IPR026541 -
Cca03g01852 309 PIRSF EAF3_MRG15 23 307 IPR008676 GO:0005634|GO:0006325|GO:0006355
Cca03g01852 309 SUPERFAMILY Chromo domain-like 23 164 IPR016197 -
Cca03g01852 309 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g01852 309 MobiDBLite consensus disorder prediction 93 136 - -
Cca03g01852 309 MobiDBLite consensus disorder prediction 122 136 - -
Cca03g01852 309 ProSiteProfiles MRG domain profile. 140 307 IPR026541 -
Cca03g01852 309 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g01852 309 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 5 308 IPR008676 GO:0005634|GO:0006325|GO:0006355
Cca03g01852 309 Pfam RNA binding activity-knot of a chromodomain 31 81 IPR025995 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01852 Cca-Chr3 37848015 37852748 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01852 K11339 - gmx:100800645 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01852 03 37848015 37852748 Cca03g01852 03 37848015 37852748 ECH