Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01846 ATGGATGAGGAATTTTCATTTCTACAACCTCTGGATCTCATCACAAAGGACCCTAATGAACTACACAATATAGTAAAATCCAAAAAGGAAAATCTACGTCAACATAAATTTGAAACAAATAAAACAATGAATGACTTGAGTCAGGACGATACTATGAAGGAACATATTCaggaaacagagaaagagaagaaagaaaaggaaaatgaaCACAAGCTAGAAAAAACAAGGTTAGAGAAAGAGAAGGAGCAAGCAAAGGGCGAATATAAAGAAATACAACACACCGATCAGAACCACACAGAGAAACATGAAGATAAAGTTACTGTTGAGAATCTAGAAAATAGAGCACATGAAGGGCTTGAGCCAATGGAGATTTCACAGAGCCCCATGTCATCGCCTGATGATACTCAATGTGATGATGTAAAAATCTTGAAAGGCCATACATCAGAGGTTTTTGCTTGTGCATGGAATCCATCAGCTCCACTTCTCGCATCTGGGTCTGGGGATTCGACAGCTCGAATTTGGAAATTTTCTGAAAGACCTTGTGAAACTAGTGTGCAAAATCAACCAGTGAATGTTATGGTGCTGCAGCACCTTAAAGAAAGCACCAAAGAAAAAAGCAAGGATGTGACAACACTTGACTGGAATGGGGATGGAACACTATTGGCAACTGGTTCCTATGATGGCCAAGCAAGAATTTGGAGTAGAGATGGGGAGTTGAATAGTACCCTAAACAAACACAAAGGTCCAATCTTTTCTCTAAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTGGATAAGACTGCTATTGTGTGGAATACAAGGACTGGGGAATGGAAACAACTATTTGAATTTCACACTGGCCCAACTCTTGATGTGGATTGGCGAAACAATGTTTCATTTGCTACATGCTCCACTGATAAAATGATACATGTTTGCAAAATTGGGGAATATAGACCAATCAAAACGTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGATCCAACAGGTTCTTTGCTGGCTTCCTGCTCTGACGATCACACTGCAAAAATATGGAGTCTAAAGCAGGACAACTTTTTGCATGATTTAAAGGAGCATGCCAAGGAGATATATACAATTCGATGGAGCCCTACAGGCCCCGGTACCAACAGTCCCAATCAGAAGTTAGTGCTAGCAAGTGCCTCATTCGACTCAACAATAAAGCTCTGGGATGTGGAACTAGGGAGTGTAATCTACAGCTTGAATGGCCACAGGGATCCTGTATATTCCGTTGCATTCAGCCCTAATGGGGAGTATCTGGCCAGTGGCTCCATGGATAGATACATTCATATATGGTCCGTGAAGGAGGGAAAGATCGTAAAAACATATACCGGAAAAGGTGGGATATTTGAAGTGAATTGGAACAAAGATGGTGATAAAGTTGCAGCTTGTTTTTCAAACAATATAGTTTGTGTTTTGGATTTCCGAATGTAA 1488 0.3965 MDEEFSFLQPLDLITKDPNELHNIVKSKKENLRQHKFETNKTMNDLSQDDTMKEHIQETEKEKKEKENEHKLEKTRLEKEKEQAKGEYKEIQHTDQNHTEKHEDKVTVENLENRAHEGLEPMEISQSPMSSPDDTQCDDVKILKGHTSEVFACAWNPSAPLLASGSGDSTARIWKFSERPCETSVQNQPVNVMVLQHLKESTKEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELNSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWNTRTGEWKQLFEFHTGPTLDVDWRNNVSFATCSTDKMIHVCKIGEYRPIKTFSGHQDEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDNFLHDLKEHAKEIYTIRWSPTGPGTNSPNQKLVLASASFDSTIKLWDVELGSVIYSLNGHRDPVYSVAFSPNGEYLASGSMDRYIHIWSVKEGKIVKTYTGKGGIFEVNWNKDGDKVAACFSNNIVCVLDFRM 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 367 IPR001680 GO:0005515
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 234 IPR001680 GO:0005515
Cca03g01846 495 Coils Coil 49 94 - -
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Cca03g01846 495 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 1 495 - -
Cca03g01846 495 Gene3D - 132 495 IPR015943 GO:0005515
Cca03g01846 495 PANTHER WD40 REPEAT PROTEIN 1 495 IPR045183 GO:0003714|GO:0016575
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 419 456 - -
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 460 IPR001680 GO:0005515
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 177 - -
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 418 IPR001680 GO:0005515
Cca03g01846 495 MobiDBLite consensus disorder prediction 32 105 - -
Cca03g01846 495 SUPERFAMILY WD40 repeat-like 140 493 IPR036322 GO:0005515
Cca03g01846 495 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Cca03g01846 495 PRINTS G protein beta WD-40 repeat signature 396 410 IPR020472 -
Cca03g01846 495 PRINTS G protein beta WD-40 repeat signature 438 452 IPR020472 -
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 280 - -
Cca03g01846 495 ProSitePatterns Trp-Asp (WD) repeats signature. 396 410 IPR019775 -
Cca03g01846 495 ProSitePatterns Trp-Asp (WD) repeats signature. 262 276 IPR019775 -
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 234 - -
Cca03g01846 495 SMART WD40_4 412 451 IPR001680 GO:0005515
Cca03g01846 495 SMART WD40_4 278 316 IPR001680 GO:0005515
Cca03g01846 495 SMART WD40_4 188 234 IPR001680 GO:0005515
Cca03g01846 495 SMART WD40_4 136 175 IPR001680 GO:0005515
Cca03g01846 495 SMART WD40_4 361 409 IPR001680 GO:0005515
Cca03g01846 495 SMART WD40_4 319 358 IPR001680 GO:0005515
Cca03g01846 495 SMART WD40_4 236 275 IPR001680 GO:0005515
Cca03g01846 495 SMART WD40_4 454 492 IPR001680 GO:0005515
Cca03g01846 495 CDD WD40 140 451 - -
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 360 - -
Cca03g01846 495 Pfam WD domain, G-beta repeat 239 275 IPR001680 GO:0005515
Cca03g01846 495 Pfam WD domain, G-beta repeat 140 175 IPR001680 GO:0005515
Cca03g01846 495 Pfam WD domain, G-beta repeat 207 234 IPR001680 GO:0005515
Cca03g01846 495 Pfam WD domain, G-beta repeat 321 358 IPR001680 GO:0005515
Cca03g01846 495 Pfam WD domain, G-beta repeat 414 451 IPR001680 GO:0005515
Cca03g01846 495 Pfam WD domain, G-beta repeat 364 409 IPR001680 GO:0005515
Cca03g01846 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 284 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01846 Cca-Chr3 37798364 37806363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01846 323 493 Miscellaneous Gene Families AT5G08390 30.636 1.07e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01846 K04508 - gmx:100783690 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01846 03 37798364 37806363 Cca03g01846 03 37798364 37806363 ECH