Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01841 ATGGAACCAATGGCTCTATTACACCGAGCCATGCGCACGACACAAAGCCAACATGCTTGGATGCTGCCTCCTCTCACCATTTGGATTTGTGTTTCAATCACACTCCGTTACGGCTATTACGCCAATTCCCGCCTCCTGCTTGGCCCTGCCTCCTCCCGTTTTATCAAGGCCAGCTCCGTTTTTGTCAAGCAGCTTCATGTATCAAACGGAAACAACAATCAAGTTATTCTTCATGCCTTCAATCAGAAACCTGAGTTAAGCTCCCAAACTAATTGGACCGTCTCCAATTTCTTCCTTGTTCAACCCTACAAAACCAAGGGGATTTCTTTGTGGTTAAATCAGGGCTCCACCGTGCGTATGAGGTGGGAAACGCACACTACTAGTAGTTTGGACTTGGATCAGCTACATGGGATGGTTATCAAAGGAGAAAACAGGTTTGAACTACTACGGGCTAAACAAACGAGCTTCCCCAATGCAATTGCTCTTCGCCAGACTGTTATTGGTAAAGATGCTGAATACATCGTTGAGGAAGATGATAAATACCACATTGGGGTTCTAAACATGAATGCCAGGAAAATAATCTTGAATATGGAAGTTAATGTTTCGGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGCAAATGGGTCCTGTAGGCTTAGTTTGGTCTTCCCTAATACTCAATATGTTATACTTACGGCAACCAACGATGGAGATGGGGGATATGTTGAAATTACTTTAGTGGCTCGTGTGTTGGTCTACATATTACTTTTAGGATTTCTTATGATTGTTGTTTATCTGATCCTGAAATTCCTTGGAGTCTATGATAGTATTAGTGATGATCAGAATAATCAAGTGAGAGTGGACACATACAGACCAAATAATGTAGTTGCAACGCAAACCGAAACTGAGCCCATGTTGCGAGTGGAGACAAATCGATTGTCACATGGAACAAATGCAGAAGATGATGAAGACGATTCAGGAGCATCTAGTTGCTCTTCAGAGGAGTTATATGATGAAAAATTATGTGCCATTTGTTACGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACATTGTGCCACGTGCTATGACTGTGCACAGAGGATTATGGAAGGGGAGAGTAAAGTGTGTCCTATATGCCGAAGGCTTATCCACAAAGTGCGAAGATTATATCACAATTAA 1200 0.425 MEPMALLHRAMRTTQSQHAWMLPPLTIWICVSITLRYGYYANSRLLLGPASSRFIKASSVFVKQLHVSNGNNNQVILHAFNQKPELSSQTNWTVSNFFLVQPYKTKGISLWLNQGSTVRMRWETHTTSSLDLDQLHGMVIKGENRFELLRAKQTSFPNAIALRQTVIGKDAEYIVEEDDKYHIGVLNMNARKIILNMEVNVSAKVYDTTKAKKMCSTANGSCRLSLVFPNTQYVILTATNDGDGGYVEITLVARVLVYILLLGFLMIVVYLILKFLGVYDSISDDQNNQVRVDTYRPNNVVATQTETEPMLRVETNRLSHGTNAEDDEDDSGASSCSSEELYDEKLCAICYDEQRNSFFVPCGHCATCYDCAQRIMEGESKVCPICRRLIHKVRRLYHN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01841 399 Pfam Domain of unknown function (DUF4792) 76 146 IPR032008 -
Cca03g01841 399 Pfam Domain of unknown function (DUF4793) 172 271 IPR032010 -
Cca03g01841 399 SUPERFAMILY RING/U-box 338 393 - -
Cca03g01841 399 Pfam Zinc finger, C3HC4 type (RING finger) 344 393 - -
Cca03g01841 399 ProSiteProfiles Zinc finger RING-type profile. 347 387 IPR001841 -
Cca03g01841 399 PANTHER OS05G0521000 PROTEIN 9 398 IPR044586 GO:0004842
Cca03g01841 399 SMART ring_2 347 386 IPR001841 -
Cca03g01841 399 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 398 - -
Cca03g01841 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 398 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01841 Cca-Chr3 37761607 37764409 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01841 - - gmx:100794488 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01841 03 37761607 37764409 Cca03g01841 03 37761607 37764409 ECH